Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq5990 542 3e-149 seq40156 511 5e-140 seq5685 136 4e-27 seq6232 132 5e-26 >seq5990 Length=34798 Score = 542 bits (600), Expect = 3e-149 Identities = 725/1001 (72%), Gaps = 8/1001 (1%) Strand=Plus/Plus Query 166045 TGGGAATCCTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTT 166104 |||| | |||||| ||||| | ||| | | |||| |||||| |||| |||||| Sbjct 10004 TGGGGTTACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTT 10063 Query 166105 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGT 166163 || ||||||| || || | ||| | ||||| ||||| || || | |||||| | Sbjct 10064 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCAT 10122 Query 166164 AGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTA 166223 || | ||||| || ||||| ||||| || ||||| || || | || |||||| | || Sbjct 10123 TGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 10182 Query 166224 TGGTAACAACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCAC 166281 || || || || || |||||||| || | || || || || || || ||| ||||| Sbjct 10183 CGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTTCAC 10240 Query 166282 TTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTC 166341 || || || || |||||||| | || ||||||||||| | || || || ||||||| Sbjct 10241 TTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTAT 10300 Query 166342 CAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAA 166401 |||| | || | |||||| | | || | | || ||||||| ||| |||||| Sbjct 10301 AAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAA 10360 Query 166402 TTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCA 166461 | || ||| || |||||||| ||||||||| || ||||| || || || ||||| Sbjct 10361 CTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCT 10420 Query 166462 GCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATG 166521 | ||| | || || ||| || | ||||| | |||||||| || ||||||| ||| Sbjct 10421 GATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATG 10480 Query 166522 CCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATC 166581 || || || || ||| || ||||||| |||| |||| ||||| || |||||||||||| Sbjct 10481 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATC 10540 Query 166582 CTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCG 166641 || |||||||| || || ||| | |||||||| |||||||||| || || || ||| Sbjct 10541 CTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGT 10600 Query 166642 GCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTC 166700 || ||||| || | | || |||| || | | | || | || ||||| |||| ||| || Sbjct 10601 GCTATGCATGGTTGCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATC 10659 Query 166701 TCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCA 166760 | ||| | ||||||| || |||||||| ||||| || || || ||||| |||||||| Sbjct 10660 TGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCA 10719 Query 166761 TGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCA 166820 |||||| || || || |||| |||||||| ||| |||||||| ||||| || | || Sbjct 10720 TGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACA 10779 Query 166821 CTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCAC 166880 |||||||| || || |||||||| || ||||||||||| |||||| | ||| | ||||| Sbjct 10780 TTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCAC 10839 Query 166881 CATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCG 166940 ||||| |||||| | || |||||||| |||||||| || | | ||| |||| |||| Sbjct 10840 TATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCA 10899 Query 166941 TGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCA 167000 ||| | || || ||||| || | | || |||||| || ||||||||||| ||||| Sbjct 10900 TGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCA 10959 Query 167001 CGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTG 167041 || ||||||||||| || |||||||| || | ||| ||| Sbjct 10960 TGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 511 bits (566), Expect = 5e-140 Identities = 726/1017 (71%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| || ||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || |||||||| || || |||||| |||| | ||| ||| ||| | || Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCG---AGTTCCTATTTGGAAGGCTGCAACTTC 5542 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | | || || ||||| || ||||||||| | | | | || ||| | | |||| || Sbjct 5543 T-TAACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATG 5601 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 |||||| || | || || ||||| | | ||||| || | || || || ||| |||| Sbjct 5602 GGGTCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTT 5661 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || |||||||| || || | || ||||| || ||| | || |||||||| | Sbjct 5662 TGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGC 5721 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | || || | || ||||| ||||| || || || |||| ||| |||||||| || Sbjct 5722 TCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTT 5781 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || ||||| ||||||||||||| || || Sbjct 5782 TGTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTT 5841 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| ||||| |||||| ||||| | || || | || || || ||||| ||||| | Sbjct 5842 TGGTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATT 5901 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || ||||||||||| ||||| ||| | | |||| ||| | || | || || Sbjct 5902 GAACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTAT 5961 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 5962 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCG 6021 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || || Sbjct 6022 TGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 6081 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 6082 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 6141 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | |||| | || || || || Sbjct 6142 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACCT 6201 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 || || |||||||| || ||||||||| | | ||||| || ||||| || ||||| || Sbjct 6202 ACGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 6261 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 ||||| || ||||| || || | |||||||| | ||||| |||||||| | ||| Sbjct 6262 GTTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 6321 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | || | || |||||||| Sbjct 6322 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5685 Length=160749 Score = 136 bits (150), Expect = 4e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 166807 TCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCT 166866 ||||| || | || |||||||| || |||||| | || ||||| ||||| || ||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 166867 CTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATC 166926 | ||| | | ||| ||||| |||||| | || |||||||| |||||||| ||| | | Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 166927 GATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGT 166986 ||| |||| ||| |||| | || || | || ||| | | || |||||| || ||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 166987 ATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTG 167041 | |||||| |||| || ||||||||||| || |||||||| || | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq6232 Length=104065 Score = 132 bits (146), Expect = 5e-26 Identities = 203/285 (71%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| |||| ||||||||| ||||||| || || | ||| | | ||| Sbjct 82867 AACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGTAACT 82808 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || | |||||| | || || ||||| || ||||| ||||| || ||||| Sbjct 82807 -TCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGA 82749 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || | || |||||| | || || || || || || |||||||| || | || | Sbjct 82748 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 82689 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || || ||| | ||||| || || || |||||||| | || |||||||| Sbjct 82688 TTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAA 82631 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTC 166362 ||| | || || | |||||||| |||| | || | |||||| Sbjct 82630 TGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTC 82586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566947277897600