Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12080 163 3e-35 seq3643 96.9 4e-15 seq39870 93.3 5e-14 seq11794 91.5 2e-13 seq3739 91.5 2e-13 seq3534 91.5 2e-13 seq1917 91.5 2e-13 seq422 89.7 6e-13 seq12583 87.8 2e-12 seq37834 86.0 7e-12 seq20748 84.2 2e-11 seq13465 82.4 8e-11 seq11972 82.4 8e-11 seq6025 82.4 8e-11 >seq12080 Length=19512 Score = 163 bits (180), Expect = 3e-35 Identities = 572/879 (65%), Gaps = 23/879 (3%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || ||||| ||||||||| | || ||||||||||| |||||||||| ||| || ||| Sbjct 8835 TTCTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTTCCTTGCAACGAAATCAGT 8776 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | ||| |||| | | || || ||| |||| || ||| Sbjct 8775 TCCATCCAATCAAATGGGTTCTGAACATCGTAGATTTTGCCACACCCCAACGCGCCCAAA 8716 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 | ||||| || ||||| || |||||||| ||||| ||| | ||||| || | | | Sbjct 8715 AGCCTATCCGCCACAAACTCGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACCA-A 8657 Query 92981 CGTACAGGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || |||| || |||||| || || || |||| || | || || || | ||| Sbjct 8656 CGCGCAGGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCGCGGACGAT 8597 Query 93040 TTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 | | || | || | | | | || ||| | | | | | ||| | | |||||| Sbjct 8596 AGCCTTCACGCG-CTCCTCGCTCAGCTTCTTGCGCAAGAGAGT-GTAGAGCAGGCACGCG 8539 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || ||| || | |||||||||||| || |||||||| ||| ||| ||||| || || Sbjct 8538 AAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGC 8479 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACC 93216 | | || || || || ||||||||||| | ||| || || || || || || || || Sbjct 8478 ATTAACCCGCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAAGAAAATGCC 8420 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGCTGATC 93274 ||| ||| || || || | | | || || || ||| | | | | |||| Sbjct 8419 TTCGACGCAAGCGAAGGCGATGAGCCTCTCCGCGAACGATTCTCCG-----CCGTCGATC 8365 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || | ||||| ||||| || ||| | ||||| | || || || |||| || Sbjct 8364 CACCGCAGGGCCCACTCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAAC 8305 Query 93335 AG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || || ||| |||| |||| || || || || |||| || ||| |||||| Sbjct 8304 AGCCGGT--TCTT-CTCGGCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATT 8248 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || || |||| ||||| || ||||| ||||| || |||||| | ||| |||| | | Sbjct 8247 TCGGAGTGGATGTTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACC 8188 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 || || || | || ||| | | ||||| || || || || ||||| || || Sbjct 8187 TGGACCTCCTTCATGAACCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCG 8128 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571 || || || | | || | || || || |||| ||||| | || || ||||| | Sbjct 8127 AAGAAGGCGAGCACGTGAGTGATGAAGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGA 8068 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 || || || |||||||| || ||| | ||||| ||||| || || || || ||| Sbjct 8067 CGTACGTCGCCGGAGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTG 8008 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 ||||| |||||||| || | || ||||||||||| ||| Sbjct 8007 TACATCTCCCATATCTCCGGGTACTGAATTGGAAACATG 7969 >seq3643 Length=118685 Score = 96.9 bits (106), Expect = 4e-15 Identities = 87/107 (81%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 470 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 411 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| ||||| |||| ||| | ||||||| || Sbjct 410 GTGGGTTCAAATCCCACTTCTGAC-AATTCTTACTCCAATTTTTTTT 365 >seq39870 Length=5063 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 3514 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 3455 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||| || ||||| ||||||| || || || ||||| Sbjct 3454 GTGGGTTCAAATCCCACTTCTGACAATTTTTTCTTCTTATTTT 3412 >seq11794 Length=3400 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 1085 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 1026 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||| || ||||| |||||||| Sbjct 1025 GTGGGTTCAAATCCCACTTCTGACAAA 999 >seq3739 Length=54697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 11468 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 11527 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||| || ||||| ||||||| || || || ||||| Sbjct 11528 TGGGTTCAAATCCCACTTCTGACAATTTTTTCTTCTTATTTT 11569 >seq3534 Length=275239 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | || Sbjct 259492 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGA 259551 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 259552 GCGTGGGTTCAAATCCCACTTCTGACA 259578 >seq1917 Length=270047 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | || Sbjct 22676 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGA 22617 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 22616 GCGTGGGTTCAAATCCCACTTCTGACA 22590 >seq422 Length=36078 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 29937 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 29878 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 29877 TGGGTTCAAATCCCACTTCTGACAAA 29852 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 24934 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 24877 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 24876 GGGCGTGGGTTCAAATCCCACTTCTGACA 24848 >seq12583 Length=14559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 14045 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 13986 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTAT 126353 ||||||| || ||||| |||||| |||| Sbjct 13985 TGGGTTCAAATCCCACTTCTGACATTTTAT 13956 >seq37834 Length=2282 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1583 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 1526 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1525 GGGCGTGGGTTCAAATCCCACTTCTGACA 1497 >seq20748 Length=730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 579 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 522 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 521 GGGTTCAAATCCCACAGCTGTCAAA 497 >seq13465 Length=13142 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 11951 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 12008 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 12009 TTCAAATCCCACAGCTGTCAATTT 12032 >seq11972 Length=11208 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 9756 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9699 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 9698 TTCAAATCCCACAGCTGTCAAA 9677 >seq6025 Length=48128 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 694 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 751 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 752 TTCAAATCCCACAGCTGTCAATTT 775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556581283721440