Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq762 91.5 1e-13 >seq762 Length=331234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || |||||||||||||||| || |||| || | Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | || ||| || || |||||||| || | || || || Sbjct 300754 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 300813 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| ||||| |||| ||| ||||| || ||||||||| | || | || ||||| || Sbjct 300814 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTACAA 300873 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || || ||| |||| |||| || || Sbjct 300874 CATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGG 300921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || || || |||| || |||||||| ||| |||| ||| | Sbjct 300922 AATGCAAATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 300981 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | | || || ||| || ||||| ||||| | || || || Sbjct 300982 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 301041 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 301042 GCAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 301101 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || || ||||| || ||| | ||| | || || || ||||| Sbjct 301102 TATCCAGAAGGAGTCTACCCTTCATCTGGTGCTTCGCCTTCGTGGTGG 301149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || ||||| || || ||||||| |||||||| ||| |||| ||| | Sbjct 317364 AATGCAGATATTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 317423 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | | || || || || ||||| ||||| | || || || Sbjct 317424 AGACACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAAGGTATCCCACCAGACCA 317483 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||||||| | ||| || || ||| | |||||| | ||| | || ||||| || Sbjct 317484 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 317543 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || || ||||| || ||| | ||| |||| || || ||||| Sbjct 317544 TATCCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCCTTCGTGGTGG 317591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422832963695200