Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3205 140 7e-28 seq11595 134 3e-26 seq2078 120 6e-22 seq8100 91.5 3e-13 seq6370 91.5 3e-13 seq4759 91.5 3e-13 seq6952 89.7 1e-12 seq10551 87.8 4e-12 seq7593 87.8 4e-12 seq5952 87.8 4e-12 seq5721 87.8 4e-12 seq5534 87.8 4e-12 seq4379 87.8 4e-12 seq4140 87.8 4e-12 seq2811 87.8 4e-12 seq2337 87.8 4e-12 seq2177 87.8 4e-12 seq556 87.8 4e-12 seq7280 86.0 1e-11 >seq3205 Length=116236 Score = 140 bits (154), Expect = 7e-28 Identities = 206/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || |||||||||| || | || || | ||| | || | |||||||| Sbjct 30224 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCAATGGCAGATCTTCAGAGGTCTATTCC 30165 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | | |||| |||||||| ||||| || | || || || || | | |||||| | Sbjct 30164 CTCCATGGTTGATGGCCTGAAGCCTGGCCAAAGGAAAATTCTTTTCTACTCTTTCAAGAG 30105 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | || | ||| || || || ||||||||||||||||| || || ||| | Sbjct 30104 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCAGC 30045 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || ||||| |||||||||||||| | || | || | || |||||||| |||||||| Sbjct 30044 TTATCATCATGGTGAGCAGAGTCTTGCGAGTACAATCATCGGAATGGCACAAGACTATGT 29985 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| |||||||| ||| |||| | || || || || ||||| ||||| Sbjct 29984 GGGCTCCAACAACATTAACCTGCTTCAACCAAATGGCCAATTTGGCACTCGT 29933 Score = 140 bits (154), Expect = 7e-28 Identities = 206/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || |||||||||| || || || || | ||| | || | |||||||| Sbjct 51829 TGACTTTGTCAACAAGGAGCTTATACTGTTTTCAATGGCAGATCTTCAGAGGTCTATTCC 51770 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | | |||| |||||||| ||||| || | || || || || | | |||||| | Sbjct 51769 CTCCATGGTTGATGGCCTGAAGCCTGGCCAAAGGAAAATTCTTTTCTGCTCTTTCAAGAG 51710 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | || | ||| || || || ||||||||||||||||| || || ||| | Sbjct 51709 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCAGC 51650 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || |||||||| ||||||||||| | | |||| | || |||||||| || ||||| Sbjct 51649 TTATCATCACGGCGAGCAGAGTCTTGCGAGCACCATCATCGGAATGGCACAAGATTATGT 51590 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| |||||||| ||| |||| | || || || || ||||| ||||| Sbjct 51589 GGGCTCCAACAACATTAACCTGCTTCAACCAAATGGCCAATTTGGCACTCGT 51538 Score = 113 bits (124), Expect = 9e-20 Identities = 203/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGC-GGTATGATGTGGAGCGTTCTATTC 218575 |||||| || |||||||||| || | || || || || || | || | ||||||| Sbjct 36318 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCAATGGCAT-ATCTTCAGAGGTCTATTC 36260 Query 218576 CCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635 || | |||| |||||||| ||||| || | || || || || | | |||||| Sbjct 36259 CCTCCATGGTTGATGGCCTGAAGCCTGGCCAAAGGAAAATTCTTTTCTGCTCTTTCAAGA 36200 Query 218636 GGAACCTGGTTCAAGAAATTAAG-GTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 ||||| | |||||| | || || || ||||||||||||| ||| | | | || Sbjct 36199 GGAACTTT-TTCAAGGATGCAAAAGTTGCCCAGTTTTCTGGTTGTGTCTGAGCATTTA-- 36143 Query 218695 GGCTACCATCACGGTGAGCAGAGTC-TGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | || ||||| ||||||||||||| ||| | || |||| | | |||||||| ||||| Sbjct 36142 GCTTATCATCATGGTGAGCAGAGTCGTGC-GAGTACCATCATCAGAATGGCACAAGACTA 36084 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 ||||||| |||||||| ||| |||| | || || || || ||||| Sbjct 36083 TGTGGGCTCCAACAACATTAACCTGCTTCAACCAAATGGCCAATTTGG 36036 >seq11595 Length=158298 Score = 134 bits (148), Expect = 3e-26 Identities = 205/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || |||||||||| || | || || | ||| | | | |||||||| Sbjct 108541 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCAATGGCAGATCTTCGGAGGTCTATTCC 108482 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | | |||| |||||||| ||||| || | || || || || | | |||||| | Sbjct 108481 CTCCATGGTTGATGGCCTAAAGCCTAGCCAAAGGAAAATTCTTTTCTGCTCTTTCAAGAG 108422 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | || | ||| || || || ||||||||||||||||| || || ||| || Sbjct 108421 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAGCATTCAGG 108362 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || |||||||||||| ||||||| | || |||| | | |||||||| |||||||| Sbjct 108361 TTATCATCACGGTGAGAAGAGTCTTGTGAGTACCATCATCAGAATGGCACAAGACTATGT 108302 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| |||||||| ||| | || | || || || || ||||| ||||| Sbjct 108301 GGGCTCCAACAACATTAACCTCCTTCAACCAAATGGCCAATTTGGCACTCGT 108250 >seq2078 Length=136540 Score = 120 bits (132), Expect = 6e-22 Identities = 198/285 (69%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || |||||||||| || | || || | ||| | || | |||||| | Sbjct 117122 TGACTTTGTCAACAAGGAGCTTATATTGTTTTCAATGGCAGATCTTCAGAGGTCTATTTC 117063 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | | |||| |||||||| ||||| || | || || || || | | |||||| | Sbjct 117062 CTCCATGGTTGATGGCCTGAAGCCTGGCCAAAGGAAAATTCTTTTCTGCTCTTTCAAGAG 117003 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | || | ||| || || || ||||||||||||| ||| | | | ||| | Sbjct 117002 GAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTGTGTCTGAGCA--TTCAGC 116945 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || ||||| |||||||||||||| | || |||| | | |||||||| |||||||| Sbjct 116944 TTATCATCATGGTGAGCAGAGTCTTGCGAGTACCATCATCAGAATGGCACAAGACTATGT 116885 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 |||| |||||||| ||| |||| | || || || || ||||| Sbjct 116884 GGGCTCCAACAACATTAACCTGCTTCAACCAAATGGCCAATTTGG 116840 >seq8100 Length=16094 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10254 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10195 Query 142563 CCCCACATCGGGCAGAAGTC 142582 |||||| |||| ||||| Sbjct 10194 CCCCACGGTGGGCGTAAGTC 10175 >seq6370 Length=12238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 1514 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 1455 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 1454 AGCCCCAC 1447 >seq4759 Length=50079 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 1918 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 1859 Query 142559 CGAGCCCCACATCGGGCAGAAGT 142581 |||||||||| |||| |||| Sbjct 1858 CGAGCCCCACGGTGGGCGTAAGT 1836 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 2136 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2077 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| |||| |||| Sbjct 2076 CCCACGGTGGGCGTAAGT 2059 >seq6952 Length=11093 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 4579 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 4520 Query 142562 GCCCCAC 142568 ||||||| Sbjct 4519 GCCCCAC 4513 >seq10551 Length=29912 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 22096 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22037 Query 142563 CCCCAC 142568 |||||| Sbjct 22036 CCCCAC 22031 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 23563 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 23504 Query 142563 CCCCAC 142568 |||||| Sbjct 23503 CCCCAC 23498 >seq7593 Length=111839 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 56475 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56534 Query 142563 CCCCAC 142568 |||||| Sbjct 56535 CCCCAC 56540 >seq5952 Length=188164 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 19891 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 19832 Query 142563 CCCCAC 142568 |||||| Sbjct 19831 CCCCAC 19826 >seq5721 Length=102451 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 92371 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 92312 Query 142563 CCCCAC 142568 |||||| Sbjct 92311 CCCCAC 92306 >seq5534 Length=39518 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 7463 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7404 Query 142563 CCCCAC 142568 |||||| Sbjct 7403 CCCCAC 7398 >seq4379 Length=74698 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 37758 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 37817 Query 142563 CCCCAC 142568 |||||| Sbjct 37818 CCCCAC 37823 >seq4140 Length=201527 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 22924 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22983 Query 142563 CCCCAC 142568 |||||| Sbjct 22984 CCCCAC 22989 >seq2811 Length=131350 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 88546 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 88487 Query 142563 CCCCAC 142568 |||||| Sbjct 88486 CCCCAC 88481 >seq2337 Length=652188 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 557853 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 557912 Query 142563 CCCCAC 142568 |||||| Sbjct 557913 CCCCAC 557918 >seq2177 Length=193264 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 18784 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18843 Query 142563 CCCCAC 142568 |||||| Sbjct 18844 CCCCAC 18849 >seq556 Length=107742 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 48412 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 48471 Query 142563 CCCCAC 142568 |||||| Sbjct 48472 CCCCAC 48477 >seq7280 Length=62766 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 195 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 254 Query 142564 CCCAC 142568 ||||| Sbjct 255 CCCAC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027307979251196