Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq762 113 3e-20 seq2332 104 2e-17 seq2326 104 2e-17 >seq762 Length=331234 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 317364 AATGCAGATATTTGTGAAGACTTTGACCGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 317423 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| || || || || || ||| | || | |||| Sbjct 317424 AGACACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAAGGTATCCCACCAGACCA 317483 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || ||||||||||| || || ||||| |||||| || ||| | || |||||||| Sbjct 317484 ACAAAGGCTTATCTTTGCAGGAAAGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 317543 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| |||||||| ||||| |||||| |||| Sbjct 317544 TATCCAGAAGGAGTCTACCCTTCATCTGGT 317573 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || || || |||||||| ||| |||| ||| | | Sbjct 300922 AATGCAAATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 300981 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| ||| || || || || ||| | || | |||| Sbjct 300982 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATCCCACCAGACCA 301041 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || ||||| ||||| ||||| || || |||||| || ||| | || |||||||| Sbjct 301042 GCAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 301101 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| |||||||| ||||| |||||| |||| Sbjct 301102 TATCCAGAAGGAGTCTACCCTTCATCTGGT 301131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || || || || || ||||| ||| |||| ||| | Sbjct 301150 AATGCAGATTTTTGTTAAGACCTTGACTGGGAAGACCATAACCCTGGAGGTTGAAAGTTC 301209 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||| ||| || || ||||| | ||| | | || Sbjct 301210 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCAGATCA 301269 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||| ||||| |||||||| || |||||| || || |||| |||||||| Sbjct 301270 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACCCTGGCTGATTACAA 301329 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||| || ||||| |||||||| || Sbjct 301330 TATCCAAAAGGAGTCTACTCTGCA 301353 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || || || || || |||||||| |||| || | Sbjct 317592 AATGCAGATTTTTGTTAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGTTC 317651 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||| ||| || || ||||| | || | |||| Sbjct 317652 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCA 317711 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||| ||||| |||||||| || |||||| || ||| |||| |||||||| Sbjct 317712 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAA 317771 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||| || ||||| |||||||| || Sbjct 317772 TATCCAAAAGGAGTCTACTCTGCA 317795 >seq2332 Length=86198 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || ||||| || ||||| | || || | | Sbjct 74458 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTCGAGAGCTC 74517 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| ||||||| |||||||| ||| | || | |||| Sbjct 74518 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 74577 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || || || ||||| ||||| || |||||| | ||| |||| || || || Sbjct 74578 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAA 74637 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||| || |||||||||||| |||| Sbjct 74638 CATTCAGAAAGAGTCTACTCTTCATTTGGT 74667 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || | || || || ||||| ||| | || ||| | | Sbjct 74686 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACCATCACCCTTGAGGTGGAGAGCTC 74745 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| ||| ||| ||||| || || | ||| | || Sbjct 74746 TGATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 74805 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| |||||||| || ||| ||| |||| |||||||| Sbjct 74806 GCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGCACTCTGGCTGATTACAA 74865 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||||||| || || ||| Sbjct 74866 TATTCAGAAGGAATCAACACTCCAT 74890 >seq2326 Length=95029 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || ||||| || ||||| | || || | | Sbjct 85013 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 85072 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| ||||||| |||||||| ||| | || | |||| Sbjct 85073 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 85132 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || || || ||||| ||||| || |||||| | ||| |||| || || || Sbjct 85133 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAA 85192 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||| || |||||||||||| |||| Sbjct 85193 CATTCAGAAAGAGTCTACTCTTCATTTGGT 85222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || | || || || ||||| ||| | || ||| | | Sbjct 85241 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACCATCACCCTTGAGGTGGAGAGCTC 85300 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| ||| ||| ||||| || || | ||| | | || Sbjct 85301 TGATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCA 85360 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| |||||||| || ||| ||| |||| |||||||| Sbjct 85361 GCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGCACTCTGGCTGATTACAA 85420 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||||||| || || ||| Sbjct 85421 TATTCAGAAGGAATCAACACTCCAT 85445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357949533275224