Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12080 226 5e-54 >seq12080 Length=19512 Score = 226 bits (250), Expect = 5e-54 Identities = 569/862 (66%), Gaps = 16/862 (2%) Strand=Plus/Plus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || ||| ||| || ||| |||||||||||||| || ||| |||||||||||||| Sbjct 7983 AGTACCCGGAGATATGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGG 8042 Query 42349 AGATTGACCTGGCCAAGGAC--ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTT 42406 || | || || || ||| ||| | |||||| || | || |||| | | Sbjct 8043 AGGTCGATCTCTCCGGCGACGTACGTCA--CTGGGAAAACCTAACCGATGACGAGAGGCA 8100 Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466 ||| ||| || | || ||||||||||||||||| |||||||| || ||||| || Sbjct 8101 CTTCATCACTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTGGAGAATCT 8160 Query 42467 GGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCA 42526 ||| ||||||||||| ||||| ||| | ||||| ||| ||||| |||||||| Sbjct 8161 GGCGGGGAGGTTCATGAAGGAGGTCCAGGTTTCGGAGGCTCGCGCTTTCTATGGCTTCCA 8220 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| || || |||||| | ||||| || ||||| ||||| | || || ||| Sbjct 8221 GATTGCGATCGAGAACATCCACTCCGAAATGTACAGTCTCTTGCTCGAGACCTATATCAA 8280 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| | | |||| ||| |||||||| | || |||||||| | || ||| | ||| Sbjct 8281 GGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGCGTGGCGAA 8340 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 |||||| || ||||| || |||||||| | || | | |||||| |||||||| Sbjct 8341 GAAGGCCGAGTGGGCCCTGCGGTGGATCGACGG---CGGAGAATCGTTCGCGGAGAGGCT 8397 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 | ||||| | |||||| ||||| |||||||| || |||| | | || || || Sbjct 8398 CATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAAGCTTCTGCGCGATATTTTG 8457 Query 42767 GCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||| || || | || |||||||| | |||||||| ||||| | ||| | || Sbjct 8458 GCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGATCTCGCGAGA 8517 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||| || || || | || || || ||||| || | | | ||| || |||| Sbjct 8518 CGAAGGTCTCCACTGCGATTTCGCGTGCCTGCTCTACAC------TCTCTTGCGCAAGAA 8571 Query 42887 CTCGA---AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || ||||||| || ||| ||| || || || ||||| || |||| |||||| Sbjct 8572 GCTGAGCGAGGAGCGCGTGAAGGCTATCGTCCGCGACGCGGTGGATATAGAGAGGGAGTT 8631 Query 42944 CCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 | | |||||||| | |||| || |||||| ||| || ||| || |||| Sbjct 8632 TGTGTGCGACGCGCTGCCCTGCGCGTTGGTTGGGATGAACGGCGATCTGATGAGCCAGTA 8691 Query 43004 CATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 |||| ||| || || || || || || | |||| || ||||| | Sbjct 8692 CATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGTTGGGGTGTGGCAAAATCTACGATGT 8751 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | | ||| || || | ||||| || |||||| | || |||||||| || || || Sbjct 8752 TCAGAACCCATTTGATTGGATGGAACTGATTTCGTTGCAAGGAAAGACCAATTTCTTTGA 8811 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||| | || | || |||||| Sbjct 8812 GAAGAGAGTTGGGGAGTACCAG 8833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943865188938560