Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2332 91.5 1e-13 >seq2332 Length=86198 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| || || || | || || ||| || ||||| ||||||||||| ||| Sbjct 74001 CCACCTCTCAAACGAAGAACTAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCC 73942 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || ||||| || ||||| ||||| ||||| | |||||| || || Sbjct 73941 AAAGTACGACCATCCTCCAACTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 73882 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGAT-TC 34076 | | ||| |||||| | | ||||||||| || | | || |||||| || | || Sbjct 73881 ATTCCCTCCTTGTCC-TGAATTTTTGCTT--TGACATTATCAATTGTATCAG-AGCTCTC 73826 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| ||||| || ||||| || || ||||| |||||||| ||||| Sbjct 73825 GACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 73775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396868077165112