Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5871 89.7 6e-13 seq4895 87.8 2e-12 >seq5871 Length=81834 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||||||||||||||| ||||| || ||||| || | ||||||||| | Sbjct 371 AAATCCATCCATCTCAGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--A 314 Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | | | || || | | ||| | || || || ||||| ||||| || || || || Sbjct 313 CCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACACAATG 254 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || || ||| || || || || | || | |||||| ||| || || || Sbjct 253 CA-GGGTGCTTTCGACTTTGCCTTCTCGAACAAGTCCCTCACTCTCGAGGCCCCAACTCC 195 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 |||||||| ||||||||| | | || | ||| || || || ||| || ||| || Sbjct 194 CACAAACAATTCCACAAACTCCGAAGCAGCACAAGAGAAAAACGGCACGCCGGCTTCTCC 135 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | |||| || | ||||||||||| || || || Sbjct 134 GGCCACTGCTCTAGCCAATAGGGTCTTCCCTGTACCGGG 96 >seq4895 Length=78305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 246/370 (66%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 ||||| || || || | || | ||| ||| || || ||| | ||| || || || Sbjct 72630 TCAAAACGTCCAGGCCTCAGTAAGGCAGAGTCCAGAATGTCAGCCCTGTTGGTTGCTGCA 72571 Query 10850 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || |||| |||||| || |||| ||||| |||||||| || ||||| || || || Sbjct 72570 ATCACAATGATGCCAGT---GTTACCTTCAAAACCATCCATTTCTGTCAAAAGCTGGTTA 72514 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCG 10963 | ||| ||||| | |||||||||| | |||| || | | | |||| || Sbjct 72513 AGGGTCTGTTCTCTTTCATCATTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCA 72457 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTCAAA 11022 ||||| ||||||||||| | || || || || || ||| | | | | ||| ||| Sbjct 72456 ACGGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAA 72397 Query 11023 GATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGA 11082 | ||| ||||||| |||||| ||||| |||||||| || ||||| | | | | Sbjct 72396 -AGATCACGGACTCGAGAGGCACCAACACCGACAAACATCTCAACAAACTCTGAACCTG- 72339 Query 11083 ACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 | || | || || || || | |||||| || || || ||| || || ||||||| Sbjct 72338 AGATAGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAGCAGAGTCTTCC 72279 Query 11142 CCGTCCCAGG 11151 | || ||||| Sbjct 72278 CAGTTCCAGG 72269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597053758360480