Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq5990 645 4e-180 seq40156 558 5e-154 seq9596 158 2e-33 seq6232 154 2e-32 seq5685 145 9e-30 seq4685 100 4e-16 seq388 98.7 1e-15 >seq5990 Length=34798 Score = 645 bits (714), Expect = 4e-180 Identities = 740/990 (75%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 ||| ||| | ||| |||||||| || ||||||||||| || ||||| |||||||| |||| Sbjct 11000 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 10941 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 | |||||| || | | | |||||||| || | ||| ||||||||| ||||| | Sbjct 10940 GGTTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTA 10881 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAG 7712 || |||||||| |||||||| || | |||||| ||||| ||||| | ||| | ||||| Sbjct 10880 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 10821 Query 7713 TGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGT 7772 |||||||||| || || || ||||| || || |||||||| || | ||||| || |||| Sbjct 10820 TGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGT 10761 Query 7773 TGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGT 7832 |||| ||| |||||||| |||| || ||||| || || |||||||| ||||| || | Sbjct 10760 TGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 10701 Query 7833 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTT 7892 | || ||||| ||||||||||| | ||||| | ||| || ||| || ||||||| Sbjct 10700 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTT 10641 Query 7893 CACGAACCAGAGAAGAGGTTAC-AAGCGAACCATGCATCGCACTGAACAGAGAACCACCA 7951 | | | || | ||| ||||| |||| |||||||||| |||||||| || ||||| | Sbjct 10640 CCCTGATCAAACTAGAAGTTACCAAGC-AACCATGCATAGCACTGAATAGGGAACCGTCG 10582 Query 7952 AAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 8011 || |||||||| || || | |||||| || |||||||| |||||||||||||| || ||| Sbjct 10581 AATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 10522 Query 8012 AAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAA 8071 || |||| |||| ||||||| |||||||| || || ||||||||| ||||||| || Sbjct 10521 AATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTT 10462 Query 8072 CCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTAT 8131 |||||||| | ||||| | | ||| ||||||| ||| ||||||||||||| || ||| Sbjct 10461 CCTTGACCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATAT 10402 Query 8132 GCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATG 8191 || ||| ||||| || ||||||||||||||| || ||||||||||||| ||||||| Sbjct 10401 GCAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATA 10342 Query 8192 TATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAG 8251 || | | ||| | | |||||| | | || || | ||||||| || ||||| Sbjct 10341 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTAT 10282 Query 8252 AGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTA 8311 | ||| ||||||| ||| | |||||||| || || || ||||| | ||| ||||| | Sbjct 10281 AACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCA 10222 Query 8312 GAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACG 8371 |||| ||||| || |||||||| || || || || || || | || || |||| || Sbjct 10221 GAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACA 10162 Query 8372 GGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACA 8430 |||||||| || || ||||| ||||| ||||||| ||| | |||||| | || || ||| Sbjct 10161 GGTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACA 10102 Query 8431 AATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACG 8490 | || || | | | ||||| ||||||| ||||| ||||| || | || ||| | Sbjct 10101 GA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGATG 10043 Query 8491 ATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || | || ||||| ||| |||||||| Sbjct 10042 GTTTTCAATGCTGGTTATCCATTTACAGAA 10013 >seq40156 Length=57058 Score = 558 bits (618), Expect = 5e-154 Identities = 736/1015 (73%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 6378 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 6319 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||||| || || || || ||||| ||||||||| Sbjct 6318 TGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTGTAGAACGTC 6259 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 6258 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCGCGTAGG 6199 Query 6443 TTAAGTGC-AAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 || || || ||| | | || | | | || | |||| | ||| | || || ||||| Sbjct 6198 TTCAGAGCCAAGCCGACTACTCCAAGAGC-ACTCATCCATAAACCGGTTACTGGTACAAA 6140 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 6139 TAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCA 6080 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 || || ||||| |||||||| ||||| || || || |||| || || | ||| || Sbjct 6079 AAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAAAAGCACG 6020 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| ||||||| |||||||||||||| |||||||| ||||| |||||||| ||||| Sbjct 6019 GAATGTATTTGCGCCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAAT 5960 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||| || || | || | || || | ||| || || |||||||||||||| ||||| | Sbjct 5959 AGCGCATAGAAGGGCAGCGCCCAATACACCCGCAACCCCCATCATATGAAATGGGTTCAA 5900 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 ||||| || || || || || | ||||| | ||| || ||||| ||||| |||||||| Sbjct 5899 TGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCGACACCAAA 5840 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 |||||||||||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 5839 ACTGGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAGGAATACAGAAACAAA 5780 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTG 6920 |||||||| ||| |||| || ||||||||||| || || || | | || ||| || | Sbjct 5779 AACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAG 5721 Query 6921 CGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAA 6980 | | ||||| || || | |||||||||||| || | || || |||||||| || |||| Sbjct 5720 CAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAA 5661 Query 6981 AAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCC 7040 ||| ||| || || || | ||| ||| || |||||||| || ||||||||||||| Sbjct 5660 AAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCTGGACCCC 5601 Query 7041 ATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGA 7100 |||| | | | || ||| | | | | ||||||||| || || || || || | || Sbjct 5600 ATAGTAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACTGCCGCGGTTAAGA 5541 Query 7101 AATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAG 7160 | || || || || | ||| ||| || | || || || ||||| || || || | Sbjct 5540 AGTTGCAGCCTTCCAAATAGGAACTCGCCAATCCATGTGTATACCATGAAGTTACAAAGG 5481 Query 7161 TTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTG 7220 |||| || || | |||||| || | || | |||||| ||| || || | ||||| | Sbjct 5480 TTGTACCTGTAAACCAACCTCCTAACGCGAAATAAGCACAAGGAAAGAGCAATAGACCGG 5421 Query 7221 ACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 5420 ACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 5366 >seq9596 Length=34882 Score = 158 bits (174), Expect = 2e-33 Identities = 199/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||| ||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 5638 AGAGTGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 5579 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||||| || || || || ||||| ||||||||| Sbjct 5578 TGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTGTAGAACGTC 5519 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 5518 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCGCGTAGG 5459 Query 6443 TTAAGTG-CAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 || || | |||| | | || | |||| | |||| | ||| | || || ||||| Sbjct 5458 TTCAGAGCCAAGTCGACTACT-CCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAA 5400 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTG 6532 | |||||||||||||| |||||| |||||| Sbjct 5399 TAACATAAAGAAATGTAACCAACGTTTATTG 5369 >seq6232 Length=104065 Score = 154 bits (170), Expect = 2e-32 Identities = 208/287 (72%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 |||||||| | ||||| | ||| ||||||| ||| | |||||||| || || || |||| Sbjct 82609 AAGGACCATCATTGTATAACCATTCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGT 82668 Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACA 8354 | | ||| ||||| ||||| ||||| || |||||||| || || || || || || | Sbjct 82669 GCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAA 82728 Query 8355 TGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGA 8414 || || |||| || |||||||| || || ||||| ||||| ||||||||||| | || Sbjct 82729 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCCACCGGAGGAGCAGCAATGA 82788 Query 8415 AAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAAC 8473 |||| | || || ||| | || | | | | ||||| ||||||| || || ||| Sbjct 82789 AAGCAATAATAAATACAGA-AGTTACGGTCAATAAGGTAGGGATCATCAAAACGCCAAAC 82847 Query 8474 CAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || || | || ||||| || | ||| ||||| | |||||||||| Sbjct 82848 CATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCTAGTTACAGAA 82894 >seq5685 Length=160749 Score = 145 bits (160), Expect = 9e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 ||| ||| | ||| |||||||| || ||||||||||| || |||| |||||| | |||| Sbjct 78729 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAA 78670 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 | |||||| || | | || || |||| || | |||| |||||||| ||||| | Sbjct 78669 GGTTAGCACGATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACTA 78610 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAG 7712 ||| |||||||| |||||||| || | |||||| ||||| ||| | | ||| | ||| | Sbjct 78609 CGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGG 78550 Query 7713 TGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 ||||||| || || || | ||||| || |||||||| || | ||||| || Sbjct 78549 TGAACCAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATGTAAAGAACGAGA 78495 >seq4685 Length=19895 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7972 CATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAA 8031 |||||| || |||||||| |||||||||||||| | ||||| |||| || | ||||||| Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 8032 CGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACC 8079 |||||||| || |||||||||||| | | ||| ||| ||||||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACC 6887 >seq388 Length=54843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| | ||| ||||||||| ||||||||||||||||| ||||| ||| || Sbjct 28226 AATGTATTTGCATTATCATCATCTTCAACTAAAGTATTCTCTACAGTTGCACCATGAGTA 28285 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGG 6736 ||||| || | || |||| || | ||| || || |||||||||||||| ||| Sbjct 28286 GCACATAGAAGAGCAACACCCAATACACCGGCAACTCCCATCATATGAAATGGG 28339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621812524456640