Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5871 87.8 2e-12 seq4895 82.4 9e-11 >seq5871 Length=81834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||||||||||||||| ||||| || ||||| || | ||||||||| | | Sbjct 370 AATCCATCCATCTCAGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--AC 313 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | || || | | ||| | || || || ||||| || ||||| || || || | Sbjct 312 CTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACACAATGC 253 Query 12910 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || || ||| || || || || | || | ||||||| ||| || || ||| Sbjct 252 A-GGGTGCTTTCGACTTTGCCTTCTCGAACAAGTCCCTCACTCTCGAGGCCCCAACTCCC 194 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||||| | | || | ||| || || || ||| || ||| || Sbjct 193 ACAAACAATTCCACAAACTCCGAAGCAGCACAAGAGAAAAACGGCACGCCGGCTTCTCCG 134 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | |||| || | ||||||||||| || || || Sbjct 133 GCCACTGCTCTAGCCAATAGGGTCTTCCCTGTACCGGG 96 >seq4895 Length=78305 Score = 82.4 bits (90), Expect = 9e-11 Identities = 194/288 (67%), Gaps = 14/288 (5%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 ||||| || || || | || | ||| ||| || || ||| | ||| || || || Sbjct 72630 TCAAAACGTCCAGGCCTCAGTAAGGCAGAGTCCAGAATGTCAGCCCTGTTGGTTGCTGCA 72571 Query 12765 ATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || |||| |||||| || |||| || || |||||||| || ||||| || || || Sbjct 72570 ATCACAATGATGCCAGT---GTTACCTTCAAAACCATCCATTTCTGTCAAAAGCTGGTTA 72514 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCG 12878 | ||| ||||| | |||||||||| | |||| || | | | |||| || Sbjct 72513 AGGGTCTGTTCTCTTTCATCATTCCCTCC---ACCAATTCCAGTTCCTCTTTGCCGTCCA 72457 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAA 12937 ||||| |||||||| |||| || || || || || ||| || || ||| ||| Sbjct 72456 ACGGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAA 72397 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | ||| || |||| |||||| ||||| ||||||||||| ||||| Sbjct 72396 -AGATCACGGACTCGAGAGGCACCAACACCGACAAACATCTCAACAAA 72350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613199250060960