Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12080 194 3e-44 >seq12080 Length=19512 Score = 194 bits (214), Expect = 3e-44 Identities = 550/840 (65%), Gaps = 25/840 (3%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || |||||||| || | || || || |||||| | | ||||||| Sbjct 8816 TCTTCTCAAAGAAATTGGTCTTTCCTTGCAACGAAATCAGTTCCATCCAATCAAATGGGT 8757 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || | ||| || | | || | || ||| | ||| || |||||||| | Sbjct 8756 TCTGAACATCGTAGATTTTGCCACACCCCAACGCGCCCAAAAGCCTATCCGCCACAAACT 8697 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||| | |||| | || | ||| ||||| | || | ||| ||||| || Sbjct 8696 CGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACCAACGCGCAGGGCAGCGCGTCGC 8637 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||||| |||| || || ||||| ||| || || | || || || | | Sbjct 8636 ACACAAACTCCCTCTCTATATCCACCGCGTCGCGGACGATAGCCTTCACGCGCTCCTCGC 8577 Query 159888 CCGGCTT---GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||| || ||| | || | || |||||||| || |||||||| || | Sbjct 8576 TCAGCTTCTTGCGCAAGAGAGTGT------AGAGCAGGCACGCGAAATCGCAGTGGAGAC 8523 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | ||||| || ||||| ||||||||||| | | | | || ||||| | ||| ||| || Sbjct 8522 CTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTTT 8463 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || | |||| |||| ||| || || || || || ||| || || Sbjct 8462 TTAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGAAAATGCCTTCGACGCAAGCGAAG 8404 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || | ||||||||| | || || | | ||| | |||||| |||||| || Sbjct 8403 GCGATGAGCCTCTCCGCGAACGATTCTCCGCCGTC---GATCCACCGCAGGGCCCACTCG 8347 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| || | ||| || | | ||| | |||| |||| | || || ||| | Sbjct 8346 GCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTTCTCGGCC 8287 Query 160184 ACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 |||||||| || ||||| || ||||||||| | ||| | || || Sbjct 8286 GAGTCCTTGATATAGGTCTCGAGCAAGAGACT----GTACATTTCGGAGTGGATGTTCTC 8231 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 ||| || ||||| ||| |||||| |||||| | ||| ||||||| |||| Sbjct 8230 GATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTGGACCTCCTTCATGAA 8171 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 ||| ||||||| | ||| | ||||||| ||| || ||||| || | |||||| Sbjct 8170 CCTCCCCGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTG 8111 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419 || |||||| || |||||||| | | | || ||||||||||| ||||| || Sbjct 8110 AGTGATGAAGTGCCTCTCGTCATCGGTTAG---GTTTTCCCAGTGACGTACGTCGCCGGA 8054 Query 160420 CAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | ||| ||||| || ||| |||| | |||| || | |||||||| |||| || Sbjct 8053 GAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCATAT 7994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794756071847360