Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4895 149 8e-31 seq12080 98.7 1e-15 seq5871 93.3 5e-14 >seq4895 Length=78305 Score = 149 bits (164), Expect = 8e-31 Identities = 292/423 (69%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 || || || ||| | | || ||||| || || |||| || || |||| | || ||| Sbjct 72600 TCCAGAATGTCAGCCCTGTTGGTTGCTGCAATCACAATGATGCCAGTGTTACCTT--CAA 72543 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| ||||||||||||||||||| || ||||| | |||||||||| || Sbjct 72542 AACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT---C 72486 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| |||| | | |||| ||| ||||||||||| ||||||| || || |||| Sbjct 72485 CACCAATTCCAGTTCCTCTTTGCCGTCCAACGGCATCAATTTCATCAACAAATACAATGC 72426 Query 16093 ATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||| || | | ||| ||| ||||| || || || ||| || ||||| Sbjct 72425 AAGGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACACCG 72367 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | || | | | || | || || || ||| || |||||| Sbjct 72366 ACAAACATCTCAACAAACTCTGAACCTG-AGATAGAGAAAAATGGAACACCAGCTTCACC 72308 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || ||| || |||||||| || || || || ||| || || | || Sbjct 72307 AGCAATTGCCTTGGCTAGCAGAGTCTTCCCAGTTCCAGGAGGACCGATAAGAAGAACCCC 72248 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | |||||| || ||| || || | | || ||||| | ||| ||||| ||||| | Sbjct 72247 TTTTGGAATGCGAGCCCCAATTGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCACTAC 72188 Query 16331 CTC 16333 ||| Sbjct 72187 CTC 72185 >seq12080 Length=19512 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||| ||||| || |||||||| | ||| || | || || | || ||||| || Sbjct 8273 TATATCAAGGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGC 8332 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGC 102178 | ||||| || || ||||| || |||| | || | || ||||| || Sbjct 8333 GTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAGAATCGTTC----GC 8388 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 ||| | ||| |||| || || || || || || || |||||||| || ||||||||| Sbjct 8389 GGAGAGGCTCATCGCCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAAGCTTCTGCGC 8448 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | |||||| || ||||| || | ||||| || | ||||||||||||| | || Sbjct 8449 GATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGAT 8508 Query 102299 CTCTCGTGACGAGGGACTCCAC 102320 ||| || ||||| || |||||| Sbjct 8509 CTCGCGAGACGAAGGTCTCCAC 8530 >seq5871 Length=81834 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/130 (76%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| ||||||||||| |||| ||||||||| | Sbjct 371 AAATCCATCCATCTCAGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--- 315 Query 16034 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 16087 ||| || ||| ||| | ||| | ||||| ||||||||||||||||| || || Sbjct 314 ---ACCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACAC 258 Query 16088 GATGCATGGT 16097 ||||| ||| Sbjct 257 AATGCAGGGT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620430818352320