Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4895 134 2e-26 seq5871 87.8 2e-12 >seq4895 Length=78305 Score = 134 bits (148), Expect = 2e-26 Identities = 284/420 (68%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 || || || ||| | | || || || || || |||| || || || | | |||||| Sbjct 72600 TCCAGAATGTCAGCCCTGTTGGTTGCTGCAATCACAATGATGCCAGTGTTACCTTCAAAA 72541 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||| ||||||| || ||||| | |||||||||| || | Sbjct 72540 CCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT---CCA 72484 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | | |||| ||| ||||||||||| ||||||| || ||||| || Sbjct 72483 CCAATTCCAGTTCCTCTTTGCCGTCCAACGGCATCAATTTCATCAACAAATACAATGCAA 72424 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || || | | || ||||| || || | ||| || ||||| ||| Sbjct 72423 GGAGCATTCTCCTTTGCCTTCTTGAAAAGATCACGGACTCGAGAGGCACCAACACCGACA 72364 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | || | | | || | || || || ||| || |||||| || Sbjct 72363 AACATCTCAACAAACTCTGAACCTG-AGATAGAGAAAAATGGAACACCAGCTTCACCAGC 72305 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| || |||||||| || || || || ||| || || | || Sbjct 72304 AATTGCCTTGGCTAGCAGAGTCTTCCCAGTTCCAGGAGGACCGATAAGAAGAACCCCTTT 72245 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| || || | | || ||||| | ||| ||||| ||||| | ||| Sbjct 72244 TGGAATGCGAGCCCCAATTGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCACTACCTC 72185 >seq5871 Length=81834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || ||||||||||| |||| ||||||||| | Sbjct 371 AAATCCATCCATCTCAGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--- 315 Query 9341 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394 ||| || ||| ||| | ||| | ||||| ||||||||||||||||| || || Sbjct 314 ---ACCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACAC 258 Query 9395 AATACATGGT 9404 ||| || ||| Sbjct 257 AATGCAGGGT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589684659137440