Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq5990 571 7e-158 seq40156 567 9e-157 seq9596 161 1e-34 seq5685 127 2e-24 seq2527 91.5 2e-13 seq87 91.5 2e-13 seq4833 86.0 8e-12 seq4685 84.2 3e-11 seq5932 82.4 9e-11 >seq5990 Length=34798 Score = 571 bits (632), Expect = 7e-158 Identities = 723/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | ||||||| | ||| ||||| | | |||| || || | || ||||| Sbjct 10004 TGGGGTTACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTT 10063 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || || | ||| | |||||| |||| || || | || ||||| Sbjct 10064 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCAT 10122 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||| |||| || ||||| || ||||| || |||||||| || |||| || || | || Sbjct 10123 TGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 10182 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 || || || || || |||||||| || ||||| |||| || || ||| ||||||| Sbjct 10183 CGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTT 10242 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| | || |||| || ||| | || || || ||||||| | Sbjct 10243 TTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAA 10302 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | |||| | | || ||||||| |||||||||||| Sbjct 10303 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACT 10362 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || || | ||||||||||| ||||| ||| || |||||||| |||||||| |||| Sbjct 10363 TAGTTTCCGTCTAGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCAGTTGCTG 10421 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 ||| ||||||| ||| | | ||||| | |||||||| || ||||||| |||| Sbjct 10422 ATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGC 10481 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | || || |||||||| || ||||||| |||| |||| ||||| || ||||||||||||| Sbjct 10482 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 10541 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | |||||||| || |||||| | || ||||| ||||| |||| |||||| || ||| | Sbjct 10542 TTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTG 10601 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| |||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 10602 CTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 10661 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 ||| | ||||||| || |||||||| ||||| || || || ||||| ||||| |||| Sbjct 10662 CTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 10721 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || || || |||| ||||| ||||| |||||||| || ||||| | || | Sbjct 10722 GTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATT 10781 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||||| || || |||||||| || || |||||||||||||| | || | ||||| | Sbjct 10782 TCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTA 10841 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| |||||| | || |||||||| |||||||| || | ||||| ||||||||| || Sbjct 10842 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATG 10901 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || || ||||| | | | || || ||| || ||||||||||||||||| | Sbjct 10902 TAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 10961 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGAC 180725 | ||||||||||| || ||||| || ||| Sbjct 10962 AACGTAATGCTCATAATTTCCCTCTAGAC 10990 >seq40156 Length=57058 Score = 567 bits (628), Expect = 9e-157 Identities = 740/1016 (73%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| || ||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||||||| | || | || || ||| | || || || || ||| Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCT 181602 || || || ||||| || || ||||||||| |||||| | || || ||| || ||| | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTT 5544 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || ||||| || || || |||||| | | | | || ||| | | |||| ||||| Sbjct 5545 AACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 5604 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 ||| ||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 5605 TCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 5664 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || |||||||| || |||| || || ||||| ||| | | ||||||||||||||||| Sbjct 5665 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 5724 Query 181783 -TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 ||| || | | ||||| || ||||| || || || || | ||| |||||||| || | Sbjct 5725 ATCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTG 5783 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| || || ||||| || || || || |||||||||||||||| ||||| | Sbjct 5784 TTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTG 5843 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 ||||||| || || || || ||| | ||||| |||| || |||||||||||||| | | Sbjct 5844 GTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 5903 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 | || || ||||||||||| ||||| ||| | |||| | || | || | || |||| Sbjct 5904 ACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTC 5963 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 | |||| ||||| || |||||| | | | |||| ||||| |||||||| ||| | Sbjct 5964 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTG 6023 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | || | ||||||||| |||||||| ||||||||||| || || |||||||| |||| Sbjct 6024 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 6083 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 182201 | || ||||| || |||| ||| |||||| | ||||| |||||||||||| | |||| Sbjct 6084 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 6143 Query 182202 TTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTT-GCTCTCAACCTT 182260 | || || | ||| | |||| ||| | | || | || | | ||| ||||| ||||| Sbjct 6144 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTA 6202 Query 182261 CGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACG 182320 || || |||||||| || || || |||||| | ||| | ||||| || || || |||||| Sbjct 6203 CGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACG 6262 Query 182321 TTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGAT 182380 |||||||| || || ||||| || |||||||| | ||||| ||| | || | ||| Sbjct 6263 TTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGAT 6322 Query 182381 CAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || || ||||| ||| || | ||||||||||| || ||||| | || ||||| || Sbjct 6323 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq9596 Length=34882 Score = 161 bits (178), Expect = 1e-34 Identities = 203/276 (74%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 182157 TTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTC 182216 |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 182217 TTTGGACAAGTTCCATCGGTATTATTGGTCTTG-CTCTCAACCTTCGTGCTTATGACTTT 182275 | |||| ||| | | || | || | | |||| |||| ||||| || || |||||||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 182276 GTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAAC 182335 || || || |||||| | ||| | ||||| || || || |||||||||||||| || || Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 182336 ATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAAC 182395 ||||| || |||||||| | ||||| ||| | || | ||||| || ||||| ||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 182396 TTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAAC 182431 || | ||||||||||| || ||||| | || ||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAAC 5633 >seq5685 Length=160749 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 180501 TCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCA 180560 || ||||| | || |||||||| || |||||| | || || || |||||||| || Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 180561 CTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATT 180620 | || | | ||| ||||| |||||| | || |||||||| |||||||| ||| | || Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 180621 GATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGT 180680 ||| |||||||| |||| | || || | || || | | || || ||| || ||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 180681 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 180725 | ||||||||||| || ||||||||||| || ||||| || ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGAC 78719 >seq2527 Length=327098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 20296 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 20237 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 20236 CCTACTTGGGGAG 20224 >seq87 Length=196929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 130564 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 130623 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 130624 CCTACTTGGGGAG 130636 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||| ||||||||||| Sbjct 130366 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCATAGGTTCAAAT 130425 Query 141314 CCTACCTGGGGAG 141326 ||||| | ||||| Sbjct 130426 CCTACTTAGGGAG 130438 >seq4833 Length=55696 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 181844 TCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGT 181903 ||| |||| | ||||||| || || ||||| |||||||||||||| || ||||| || Sbjct 33042 TCTATATTCTTGATCTATCA-CTAGGTCAATCTAGTTGGTTCTTTGCACCTAGTTTTTGT 33100 Query 181904 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 181963 ||| | || || || | ||| | ||||| || || | |||||||||||||| | | Sbjct 33101 GTCACAGCTATATTTCAATTCATCCTCTTTTTCTAGTGGTTTCATAATTGGACATTGGAC 33160 Query 181964 CCCTTCCATATGATGGGTGTTG 181985 | || |||||||||| |||| Sbjct 33161 CTATTTTATATGATGGGAGTTG 33182 >seq4685 Length=19895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 180272 ||||| || || |||||||| || ||||||| | || |||| ||||| | ||||||||| Sbjct 6863 ATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTGATTGTATTCCAGGTTGAGCACAAC 6804 Query 180273 ATCCTGATGCACCCCTTCCACATG 180296 ||||| |||||||| || |||||| Sbjct 6803 ATCCTTATGCACCCATTTCACATG 6780 >seq5932 Length=82879 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| || ||||||| | |||||||||||||| ||| Sbjct 58718 TTCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 58777 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 58778 CCTACTTGGGGAG 58790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610090411326240