Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq40156 544 9e-150 seq5990 529 2e-145 seq9596 170 2e-37 seq5685 140 4e-28 seq13284 109 6e-19 seq9248 96.9 4e-15 >seq40156 Length=57058 Score = 544 bits (602), Expect = 9e-150 Identities = 731/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | |||||||| ||| Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||| ||| | || | ||||| ||| | || |||||| | ||| Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| || || ||| | || |||| || || |||||| |||||| Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCC---TATTTGGAAGGCTGCAACTTC 5542 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || ||| |||||| | | | | |||||| || | || |||||| Sbjct 5543 TTAACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGG 5602 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||||||||||||||| ||||| ||| ||||||||||| || ||||| |||| ||| Sbjct 5603 GGTCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTT 5662 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || || || || || | | | || ||||||||| | | || |||||| | || Sbjct 5663 GTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 5722 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| || |||||||||| ||| |||||||| ||| Sbjct 5723 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTT 5782 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || ||| || || || || || || || ||||| ||||||||||| ||| ||| Sbjct 5783 GTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTT 5842 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || || |||| || || | ||| | | || | ||||| || || || ||||| ||| Sbjct 5843 GGTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 5902 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || || || | ||||||| || | || | ||||| Sbjct 5903 AACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATT 5962 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||||| ||| ||||| || || || | |||||| ||||| |||||||| ||| Sbjct 5963 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGT 6022 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 6023 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 6082 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||| || |||| ||||| || || |||||| | ||||| || ||||| ||| Sbjct 6083 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 6142 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | ||| | |||| || |||| | | ||| | ||||| || || Sbjct 6143 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACCTA 6202 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203 || || || || ||||| |||||| ||| | ||||| |||||||| ||||||||||| Sbjct 6203 CGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACG 6262 Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263 |||||||||||||| || || || |||||||| ||||||| ||| |||| || ||| Sbjct 6263 TTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGAT 6322 Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 6323 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5990 Length=34798 Score = 529 bits (586), Expect = 2e-145 Identities = 687/947 (73%), Gaps = 2/947 (0%) Strand=Plus/Plus Query 167905 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 167963 || ||||| || || ||||||| || || | ||| | |||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 167964 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 168023 || ||| | ||| |||| || ||||| || || || || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 168024 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGG 168083 || | || || || || || || |||||||| || | ||| ||||| ||||| || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 168084 ACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGG 168143 ||||||| || || || |||||||| | || | ||||| ||||| || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 168144 TCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGA 168203 ||||| | ||| | || | |||||| | | ||| | | || ||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 168204 ATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACC 168263 ||||||||| | ||| |||||||||| || ||||| ||||||||| || || || Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 168264 AGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGA 168323 ||| |||| || | ||| || ||| | | ||||| | |||||||| || || ||||| Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 168324 TGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCA 168383 | ||||| || ||||| || || || ||||||| |||| | || ||||| |||||||| Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 168384 CAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTT 168443 ||| || || ||||| || || || ||| | || || ||||| ||||| | || | Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 168444 GTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAAC 168503 || ||||||||||| || | ||||| |||||| | | | || || || || |||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 10653 Query 168504 CGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGC 168563 ||||| ||| | ||||||| ||||| ||||| |||||||| || || |||||||| Sbjct 10654 TGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 10713 Query 168564 CGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTC 168623 ||||||||||| || || || ||||| |||||||| ||| |||||||| || || || Sbjct 10714 TGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTC 10773 Query 168624 CTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGT 168683 || || |||||||| || || |||||||| || || ||||||||||| || | || | Sbjct 10774 TTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 10833 Query 168684 CTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCA 168743 | ||| ||||| |||||| | || |||||||| |||||||| || | ||||| |||| Sbjct 10834 CAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 10893 Query 168744 GGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGT 168803 |||| ||| | || |||||||| || || | || || ||| || ||||||||||| Sbjct 10894 AGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGT 10953 Query 168804 TATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTG 168850 ||||||||| ||||| || || || ||||| || || | ||| ||| Sbjct 10954 TATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq9596 Length=34882 Score = 170 bits (188), Expect = 2e-37 Identities = 199/266 (75%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 170040 TTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTC 170099 |||| ||||| || || |||||| | ||||| || ||||| ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 170100 TTTGGACATCCTCTATTGGCATTATTGGCCTTG-CTCTCAATCTTCGTGCTTACGATTTC 170158 | |||| || |||| | || | | |||| |||| || || || || || || ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 170159 GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAAC 170218 || |||||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 170219 ATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAAC 170278 || || || |||||||| ||||||| ||| |||| || ||||| || ||||||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 170279 TTCATCTTCCCAGAAGAAGTTCTTCC 170304 | || ||||| || || ||||| || Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACC 5623 >seq5685 Length=160749 Score = 140 bits (154), Expect = 4e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 168616 TCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 168675 || || || || || ||||||||| || |||||| | || || || ||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 168676 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 168735 | || || ||| ||||| |||||| | || |||||||| |||||||| ||| | || Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 168736 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGT 168795 ||| |||| ||| |||| | || |||| || ||| || | || || ||| || ||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 168796 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTG 168850 | ||||||||||| ||| ||||| || || || ||||| || || | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq13284 Length=8732 Score = 109 bits (120), Expect = 6e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 169522 ACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGT--TCGCTGGTGT 169579 |||||| || | || |||||||||||| ||||| |||| || |||| ||| | |||| Sbjct 2539 ACACTCTTTGTTGTTACTATGGGGTCCAAAAGCATAAGGAGA--TCGTACTCGTTAGTGT 2482 Query 169580 CAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTC 169639 ||||| || |||| |||| ||||| || || |||| || || | | || |||||| Sbjct 2481 CAATTAGGCAGTCTGTGGACTTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTC 2422 Query 169640 ATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCA 169699 ||| | | || |||||| | || | | || | || ||||||||||| || ||| Sbjct 2421 ATGTTACGTCAATTTGAACTTGCTCAATCTGTTCAATTGCGACCTTATAATGCAATCGCA 2362 Query 169700 TTCTCTGGTCCTATTGCTGTATTTGT 169725 |||| || ||| |||||||| ||||| Sbjct 2361 TTCTTTGCTCCAATTGCTGTTTTTGT 2336 >seq9248 Length=16338 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 169502 ACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGC 169561 || |||||| | | ||| || ||| || | || ||||||||||||||||| |||| Sbjct 838 ACTCCTGCTAATAGTTTGGCACGCTCTTTGTTGTTACTATGGGGTCCAGAAGCGTAAGGA 779 Query 169562 GATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCA 169621 ||||| ||| |||||||||| || |||| |||| ||||| || || || | || Sbjct 778 GATTTTACTCGTTGGTGTCAATCAGGCAGTCTGTGGACTTTTGTTGCTCTCCACGACGCT 719 Query 169622 TTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGT 169681 || | | || ||||||||| | || ||| || | || | | || | | Sbjct 718 TTCAGACTAATAGGTTTCATGTTACATCAATTTAAACTTGCTCAATCTGTTCAATTGTGA 659 Query 169682 CCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGT 169719 ||||||||||| |||||||||| || ||| |||||||| Sbjct 658 CCTTATAATGCAATTGCATTCTATGCTCCAATTGCTGT 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574185242976480