Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq5990 569 2e-157 seq5685 120 3e-22 seq4685 104 3e-17 seq3690 86.0 7e-12 seq2753 84.2 2e-11 >seq5990 Length=34798 Score = 569 bits (630), Expect = 2e-157 Identities = 721/989 (73%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| ||||| |||| |||| | | ||| ||||| |||| ||||| ||||| || Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| |||| || |||||| | || Sbjct 10073 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTACTCC 10131 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || ||||| || Sbjct 10132 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAA 10191 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || ||| | ||||| |||||||| Sbjct 10192 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAAT 10251 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| | | | | ||||| |||||||| ||||| |||||||| || | | | Sbjct 10252 ATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGT 10311 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || || |||||| |||||||| | | | | Sbjct 10312 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCG 10371 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 ||||||||| | |||||||| |||||| |||||||| ||||| ||| ||| ||| Sbjct 10372 TCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGC 10431 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | |||| || ||||||| || || ||||| ||||||||||||||||| Sbjct 10432 TGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 10491 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 10492 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10551 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | |||| || || |||||| || |||||||| Sbjct 10552 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATGG 10611 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 || | ||||| ||| | | ||||| || || || || | |||||| ||| | || Sbjct 10612 TTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 10671 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 10672 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 10731 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| || ||||| ||||| ||||||||||| || | | | || ||||||||||| Sbjct 10732 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 10791 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 10792 GGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 10851 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 ||| || || || || || |||||||| || || ||| | | ||| | | ||| ||| Sbjct 10852 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATAC 10911 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| | | | |||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 10912 CTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 10971 Query 169450 TCACAACTTCCCACTAGACTTAGCATCTG 169478 ||| || ||||| ||||||||||| |||| Sbjct 10972 TCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq5685 Length=160749 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 169283 GTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTT 169342 ||| || | ||||| ||| || | |||||| || ||||| |||||||| || || || Sbjct 78534 GTAGGTATTTGGTTCACCGCTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTC 78593 Query 169343 AACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTA 169402 || || |||||||| || || ||| | | ||| | ||| ||| | || ||| | Sbjct 78594 AATTTCAACCAATCCGTAGTTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATT 78653 Query 169403 CTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCA 169462 |||| | || |||||||||| |||||| |||| ||| ||||| ||||| || ||||| Sbjct 78654 ATTAATCGTGCTAACCTTGGTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCT 78713 Query 169463 CTAGACTTAGCATCTG 169478 ||||||||||| |||| Sbjct 78714 CTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 168943 TTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCA 169002 ||| ||| ||||||||||||| ||||||||||| || ||||||||| || | |||||||| Sbjct 6876 TTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTGATTGTATTCCA 6817 Query 169003 AGCAGAGCACAACATTCTTATGCATCCCTTCCATATG 169039 | ||||||||||| |||||||| || || || ||| Sbjct 6816 GGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq3690 Length=176667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| || ||||||||||||||||| |||||||| |||| ||| Sbjct 116815 TGGGCTGATATTATTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCT 116756 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 || || ||||| ||||||||||| |||| ||| Sbjct 116755 CATAATTTCCCTCTAGACTTAGCTTCTGTTGA 116724 >seq2753 Length=60576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 169404 TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCAC 169463 ||||| || ||||||||||||||||| |||||||| |||| ||||| || ||||| | Sbjct 53396 TTAACCATGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATAATTTCCCTC 53337 Query 169464 TAGACTTAGCATCTGCTGA 169482 |||||||||| |||| ||| Sbjct 53336 TAGACTTAGCTTCTGTTGA 53318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564158278538880