Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq5990 508 7e-139 seq40156 497 1e-135 seq5685 132 5e-26 seq9596 98.7 1e-15 >seq5990 Length=34798 Score = 508 bits (562), Expect = 7e-139 Identities = 681/940 (72%), Gaps = 8/940 (1%) Strand=Plus/Plus Query 162427 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 162485 || ||||| || || ||||||| || || | ||| | ||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 162486 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 162545 || ||| | ||| |||| || ||||| || || || || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 162546 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 162605 || | || || || || || || |||||||| || |||| |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 162606 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 162665 | ||||||| || || || |||||||| | || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 162666 TCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGA 162725 ||||| | || | || | |||||| | | || | | || ||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 162726 ATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCAC 162784 |||||||| || |||||| |||||||| || ||||| ||| || ||||| || || | Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTC 10412 Query 162785 CTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162844 | ||||| | ||| | || || ||| || | ||||| | |||||||| || |||| Sbjct 10413 CAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTG 10472 Query 162845 ACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGC 162904 ||| ||||| | || || |||||| ||||||| |||| |||| ||||| || |||| Sbjct 10473 ACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 10532 Query 162905 ACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCAC 162964 ||||||| || ||||| || || |||||||| ||||| || ||||| |||| ||||| | Sbjct 10533 ACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCC 10592 Query 162965 TGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAA 163024 | |||||||| ||||| |||| ||||| || ||| | || | || || || |||| Sbjct 10593 TATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 10652 Query 163025 CTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCG 163084 ||| || ||| | ||||||| ||||||||||| ||||| || || || ||||| | Sbjct 10653 ATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 10712 Query 163085 CAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTT 163144 | || |||||||| || || || ||||| ||||||||||| |||||||| || |||| Sbjct 10713 CTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTT 10772 Query 163145 CCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCG 163204 | || || |||||||| || || |||||||| || || ||||||||||| | ||| | Sbjct 10773 CTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTG--CTTTAGG 10830 Query 163205 TGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 163262 | ||| || ||||| |||||| | || |||||||| |||||||| || | ||||| | Sbjct 10831 TATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 10890 Query 163263 TCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGA 163322 ||| |||| ||| | || |||||||| | || | || ||||| | |||||||| Sbjct 10891 TCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGA 10950 Query 163323 AGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGAC 163362 ||||||||| || || |||||||| || ||||| || ||| Sbjct 10951 AGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGAC 10990 >seq40156 Length=57058 Score = 497 bits (550), Expect = 1e-135 Identities = 730/1023 (71%), Gaps = 10/1023 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || |||||||| ||| | |||||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||||||| | || | || || ||| |||| |||||||| || Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTG-AGGGTGCTAATTTTCT 163799 || || || ||||| || |||||| |||| | ||||||| | | ||| ||| || || | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTT 5544 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858 || ||||| || || || |||||| | | | | || ||| || || || || |||| Sbjct 5545 AACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTACTATGGG 5603 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 |||| || || || || ||||| || ||| ||| | || || || |||| ||||| Sbjct 5604 GTCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTG 5663 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | || |||||||| || || | || || ||||||||| | || |||||||||||||||| Sbjct 5664 TTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 5723 Query 163979 G-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 | ||| || | | |||| || ||||| || || ||||||| ||| |||||||| || Sbjct 5724 GATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTT 5782 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 ||| ||| || || || || || || ||||| || |||||||||| || || |||| Sbjct 5783 GTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTT 5842 Query 164098 GGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTG 164157 || || ||||| || || ||||| || | || | ||||| |||||||| ||||| ||| Sbjct 5843 GGTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 5902 Query 164158 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATT 164217 ||||| || ||||||||||| ||||| ||| || | |||| || | |||| |||||| Sbjct 5903 AACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATT 5962 Query 164218 CACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 164277 || || | || || |||||||| || | ||||||||| || ||||| || || Sbjct 5963 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGT 6022 Query 164278 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 164337 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 6023 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 6082 Query 164338 TCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 164397 || || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 6083 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 6142 Query 164398 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 164457 || || || | ||| |||||| || |||| | | ||| | ||||| || || Sbjct 6143 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACCTA 6202 Query 164458 CGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACT 164517 || || || || || || ||| || || | ||||| ||||||||||| || ||||| Sbjct 6203 CGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACG 6262 Query 164518 TTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGAC 164577 ||||| ||||| || || | || || ||||| | ||||| ||| | || | || Sbjct 6263 TTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGAT 6322 Query 164578 CAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTT 164635 |||| || || ||| || | ||||| || || || || || | || || || |||| Sbjct 6323 CAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 6380 Query 164636 AAT 164638 ||| Sbjct 6381 AAT 6383 >seq5685 Length=160749 Score = 132 bits (146), Expect = 5e-26 Identities = 175/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 163138 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 163197 || ||||| || || ||||||||| || |||||| | || || || |||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCG-- 78552 Query 163198 CTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCC 163255 ||| || ||| || ||||| |||||| | || |||||||| |||||||| ||| | Sbjct 78553 CTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 78612 Query 163256 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGG 163315 ||||| |||| ||| |||| | || |||| || || || | || ||||| | | Sbjct 78613 TTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTG 78672 Query 163316 GTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCCG 163375 ||| ||||||||||| || || |||||||| || ||||| || ||| | || ||| || Sbjct 78673 GTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTGTCG 78732 Query 163376 A 163376 | Sbjct 78733 A 78733 >seq9596 Length=34882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 164353 GTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 164412 ||||| ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| Sbjct 5358 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGT 5417 Query 164413 CTATGGACATCCTCTATTGGCATTATTGGCCTTG-CTCTCAATCTTCGTGCTTACGATTT 164471 |||||| || |||| | || | | |||| |||| || || || || || || || Sbjct 5418 TTATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTT 5476 Query 164472 TGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAA 164531 || ||| || || | ||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 5477 CGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAA 5536 Query 164532 CATCTTATTGAACGAAGGACTCCGTGCATGG 164562 || | || || ||||| | ||||| ||| Sbjct 5537 TATTCTTTTAAATGAAGGCATTCGTGCTTGG 5567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557304120711200