Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq40156 609 3e-169 seq5990 574 5e-159 seq9596 181 1e-40 seq6232 179 4e-40 seq13284 104 3e-17 seq4685 91.5 2e-13 seq13182 89.7 6e-13 seq2250 89.7 6e-13 seq9475 82.4 9e-11 >seq40156 Length=57058 Score = 609 bits (674), Expect = 3e-169 Identities = 740/1003 (74%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| |||||||| || || | || ||| Sbjct 5378 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5437 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | || | || |||||| |||| || || | || || || ||| Sbjct 5438 CCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 5497 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 ||||| || || ||||| ||||||||| |||| ||| ||||| | || ||||||||| Sbjct 5498 TATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCGGCAGTT 5557 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 |||||| || || | | | || ||| | || | || |||||||| || |||||| Sbjct 5558 TCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACAA 5617 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || || || ||| ||||||| || |||||||| Sbjct 5618 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGC 5677 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 ||||||| ||||| ||||||||| | ||||| |||||||| || || ||| || | | Sbjct 5678 GCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 5736 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || ||||| || || ||||||| ||| || |||||||||||| || || || Sbjct 5737 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 5796 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || || || ||||| || ||||||| || || || ||| || ||| |||| || Sbjct 5797 GATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTAT 5856 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || |||||| | ||||| | ||||| || ||||| |||||| |||| ||||||||||| Sbjct 5857 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 5916 Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093 |||||| || || ||| | ||||| | ||| | || | || |||||||||| ||| || Sbjct 5917 GATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCGT 5976 Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153 ||| |||||| | | | |||||||||| |||||||| ||| || ||| || || Sbjct 5977 AGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAAC 6036 Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 ||| | || || || ||||||||||| || || ||||| || ||||| || |||||||| Sbjct 6037 TCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGG 6096 Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273 |||| || ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 6097 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 6156 Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTT-GCTCTCAACCTTCGTGCTTATGACT 169332 | | |||| ||| | | || | || | | ||| ||||| ||||| || || ||||||| Sbjct 6157 TTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGACT 6215 Query 169333 TTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGA 169392 | ||||| || || ||| | ||||| |||||||| || |||||||||||||||||||| | Sbjct 6216 TCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAA 6275 Query 169393 ACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGA 169452 | || || || || ||||| ||||||| ||| | || || ||||| |||||||| | Sbjct 6276 ATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 6335 Query 169453 ACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || || | ||||||||||| || || ||||| || || || || Sbjct 6336 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 6378 >seq5990 Length=34798 Score = 574 bits (636), Expect = 5e-159 Identities = 722/998 (72%), Gaps = 2/998 (0%) Strand=Plus/Plus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 |||| | ||| || | ||| | ||||||| | | |||| ||| || | || ||||| Sbjct 10004 TGGGGTTACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTT 10063 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGT 167197 || ||| ||||||||||||| || | | |||| | ||||| || || || || ||| | Sbjct 10064 GGTGTTTTGATGATCCCTACCTTATTGACCGCAA-CTTCTGTATTTATTATTGCTTTCAT 10122 Query 167198 CGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTA 167257 | | ||||||| ||||| || |||||||| || ||||| ||| |||| || || | || Sbjct 10123 TGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 10182 Query 167258 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTT 167317 || || || || || |||||||| || ||||| ||||| ||||| ||| ||||||| Sbjct 10183 CGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTT 10242 Query 167318 CTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCA 167377 || || || |||||||| | || | || || ||||| |||||||| ||||||| | Sbjct 10243 TTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAA 10302 Query 167378 ACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACT 167437 || | ||| | |||||| | |||| | | |||||||||| |||||||||||| Sbjct 10303 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACT 10362 Query 167438 CTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGC 167497 || |||||| |||||||| || ||||| ||||||||| || |||||||| |||| Sbjct 10363 TAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGA 10422 Query 167498 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCC 167557 ||| ||||||| ||| | | ||||| | |||||||| || ||||||| ||||| Sbjct 10423 TGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCC 10482 Query 167558 TCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 167617 ||| || || |||||||| ||||||| |||| |||| ||||| || |||||||||||||| Sbjct 10483 TCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 10542 Query 167618 GATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGC 167677 |||||||| || || ||| | || || ||||| ||||||| |||||| || |||||||| Sbjct 10543 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGC 10602 Query 167678 AATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCA 167737 ||||| |||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 10603 TATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 10662 Query 167738 GAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGG 167797 ||| | ||||||| |||||||| || ||||| || ||||| ||||| ||||||||||| Sbjct 10663 TAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGG 10722 Query 167798 TTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTT 167857 ||| || || || |||| |||||||| || |||||||| || || || | || || Sbjct 10723 TTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTT 10782 Query 167858 CTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNN 167917 |||| | || || |||||||| || |||||||||| Sbjct 10783 CTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAT 10842 Query 167918 NNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGT 167977 |||||| | || |||||||| |||||||| ||| | |||||||| ||| | || Sbjct 10843 GGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGT 10902 Query 167978 TCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGA 168037 | ||| ||||| | | | || |||||| || ||||||||||||||||| || Sbjct 10903 AATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGA 10962 Query 168038 GCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 ||||||||||| || |||||||| ||| | ||| ||| Sbjct 10963 ACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq9596 Length=34882 Score = 181 bits (200), Expect = 1e-40 Identities = 200/264 (76%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 169227 AATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGT 169286 ||||| | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| Sbjct 5370 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 5429 Query 169287 TCCATCGGTATTATTGGTCTTG-CTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGA 169345 | | || | || | | |||| |||| ||||| || || |||||||| ||||| || || Sbjct 5430 GCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGA 5488 Query 169346 GATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAA 169405 ||| | ||||| |||||||| || |||||||||||||||||||| || || || || || Sbjct 5489 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAA 5548 Query 169406 CGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCC 169465 ||||| ||||||| ||| | || || ||||| |||||||| ||| || | ||||| Sbjct 5549 TGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 5608 Query 169466 TGAGGAAGTACTTCCCCGAGGTAA 169489 |||||| || || ||||| || || Sbjct 5609 TGAGGAGGTTCTACCCCGTGGAAA 5632 >seq6232 Length=104065 Score = 179 bits (198), Expect = 4e-40 Identities = 223/303 (74%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 167103 ACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTG 167162 ||||||||| | |||||||| || | || ||||| |||||| ||||||||||||| || Sbjct 82879 ACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTA 82820 Query 167163 CTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGA 167221 | | | || | ||||| || || || || ||| | | ||||||||| ||||| || || Sbjct 82819 TTGACCGTAA-CTTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGA 82761 Query 167222 TGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGC 167281 |||||| || ||||| ||| |||| || || | || || || || || || |||||||| Sbjct 82760 TGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGC 82701 Query 167282 AGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAC 167341 || ||||| ||||| ||||| ||| | ||||| || || || |||||||| | | Sbjct 82700 CATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTC 82641 Query 167342 CCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGAT 167401 | | || || ||||| ||||||| |||||||| | || | ||| | |||||| | | Sbjct 82640 CGTTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 82581 Query 167402 TGG 167404 ||| Sbjct 82580 TGG 82578 >seq13284 Length=8732 Score = 104 bits (114), Expect = 3e-17 Identities = 175/247 (71%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 168659 TCTTA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCT 168717 ||||| | ||||||||| |||||| | || | | | || ||| | || | || | Sbjct 2579 TCTTAACCGCGGCAGTTTCTACTCCTACTAATAGTTTAGCACACTCTTTGTTGTTACTAT 2520 Query 168718 GGGGTCCTGAGGCACAAGGGGATT-TCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCT 168776 ||||||| | ||| |||| ||| | || | | ||||||| | || | || ||| || Sbjct 2519 GGGGTCCAAAAGCATAAGGAGATCGTACTC-GTTAGTGTCAATTAGGCAGTCTGTGGACT 2461 Query 168777 TTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTG 168836 ||||| || ||||| | |||||| ||||| ||||||||| | ||||| |||||||| Sbjct 2460 TTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTTGAACTT 2401 Query 168837 GCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 168895 || | ||| || | | || || || ||||| || || |||| || ||| || ||||| Sbjct 2400 GCTCAATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGCTCCAATTGCTGT 2342 Query 168896 TTTTGTT 168902 ||||||| Sbjct 2341 TTTTGTT 2335 >seq4685 Length=19895 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 167529 GGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG 167588 ||||||| ||| ||| | | ||||||||||| || |||||||| ||||||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 167589 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATG 167636 |||| ||||| | |||||||||||||| |||||||| || || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq13182 Length=14344 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 169325 TTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTA 169384 ||||||||||||||| | || ||| ||| ||||||||| || ||||||| |||||| Sbjct 7670 TTATGACTTTGTTTCTTAGGAAATCCATGCATTAGAAGATCCTGAATTTGAGATGTTCTA 7611 Query 169385 CACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACC 169444 |||||| || || | || || |||||| || |||| || | ||| || ||| | | Sbjct 7610 CACCAAAAATATTAT-TTAAATGAAGGTATTTGTGCTTGTATGGCAACTCAAGATTAGCT 7552 Query 169445 TCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCC 169480 |||| | || || | |||| |||||| || || || Sbjct 7551 TCATAAAAAACTTATATTCCTTGAGGAGGTTCTACC 7516 >seq2250 Length=25732 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 169324 CTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCT 169383 ||||| ||||||||| ||||| || | |||||||||||||| | ||||||||||||| Sbjct 5394 CTTATTTCTTTGTTTCTCAAGAAATTCGTGCAGCAGAAGATCCTAAATTTGAGACGTTCT 5453 Query 169384 ACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGC 169420 ||||||| || || || || || ||||| || |||| Sbjct 5454 ACACCAAAAATATTCTTTTAAATGAAGGCATTAGTGC 5490 >seq9475 Length=46076 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 167109 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCA 167168 ||| | |||||||| || | || ||||| |||||| ||||||||||||| || ||| | Sbjct 2485 ACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTT-ATTGAA 2427 Query 167169 GCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTAT 167227 | | ||||| || || || || ||| | | ||||| | | ||||| || |||||||| Sbjct 2426 CTCAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCTTTCGGTGGATATTGATGGTAT 2367 Query 167228 CCGCGAACCAGTTGCTGGTTCACTCATGTAT 167258 | ||||| ||| |||| | | ||||| || Sbjct 2366 TTGTGAACCTGTTTCTGGATGA-TCATGCAT 2337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560326602814400