Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq5990 473 2e-128 seq4685 109 8e-19 >seq5990 Length=34798 Score = 473 bits (524), Expect = 2e-128 Identities = 684/965 (71%), Gaps = 0/965 (0%) Strand=Plus/Plus Query 215317 TGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGC 215376 ||| || | | | ||| |||| ||||||||||| | ||||| ||| | | | | || Sbjct 10036 TGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGC 10095 Query 215377 TACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAG 215436 || || || || | || ||||| ||| | ||||| || ||||| || || || | Sbjct 10096 AACTTCTGTATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCG 10155 Query 215437 AGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACC 215496 || || ||| |||| ||| || | || || || || || || |||||||| || | || Sbjct 10156 TGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCC 10215 Query 215497 TAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGA 215556 || ||| || || || || ||||| ||||| || |||||||| | | ||||| || Sbjct 10216 TACTTCTGCAGCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGA 10275 Query 215557 ATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTC 215616 |||| | |||||||| || |||| | || || | | |||||| | ||||| | | Sbjct 10276 ATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 10335 Query 215617 TGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTG 215676 | || || ||||||||||| || | | |||||||| | |||||||| Sbjct 10336 TTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGC 10395 Query 215677 TGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGG 215736 |||||| || || || || || ||| ||| ||| || ||| | | ||||| | || Sbjct 10396 TGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGG 10455 Query 215737 TCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTT 215796 ||| || || ||||| | |||||| || ||||| ||||| || ||||||| |||| | Sbjct 10456 TCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 10515 Query 215797 TGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGG 215856 ||| |||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 10516 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 10575 Query 215857 TGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAAT 215916 ||| |||| ||||| | ||| ||| ||||| |||| | || || ||| | | || Sbjct 10576 TGTATTCGACGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGAT 10635 Query 215917 CAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGA 215976 ||| || || || || | |||||| ||| | ||||||| ||||| |||||||| || Sbjct 10636 CAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGA 10695 Query 215977 AACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATC 216036 ||| || || ||||||||||| || ||||| ||||| || | || |||||||| || Sbjct 10696 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAG 10755 Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 ||||||||| || | | | || |||||||| || || | ||||| | ||||||| Sbjct 10756 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTG 10815 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 | ||||| | ||| || |||||||| |||||| | || |||||||| |||||||| Sbjct 10816 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 10875 Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216 ||||| || || ||| | || ||| ||| ||||| | || |||| | || Sbjct 10876 ATCTGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGC 10935 Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276 |||||||||||||| ||||| || ||||| ||||| || ||||| ||||||| || Sbjct 10936 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGC 10995 Query 216277 TGCTG 216281 | ||| Sbjct 10996 TTCTG 11000 >seq4685 Length=19895 Score = 109 bits (120), Expect = 8e-19 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 215746 TTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCA 215805 ||| ||| ||| |||||| |||||||| ||||| || ||||||| | || |||| ||||| Sbjct 6876 TTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTGATTGTATTCCA 6817 Query 215806 GGCTGAGCACAACATTCTGATGCACCCATTCCACATGT 215843 || |||||||||||| || ||||||||||| ||||||| Sbjct 6816 GGTTGAGCACAACATCCTTATGCACCCATTTCACATGT 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744707606290880