Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq5990 580 1e-160 seq40156 576 2e-159 seq9596 174 2e-38 seq5685 158 1e-33 seq13284 87.8 2e-12 >seq5990 Length=34798 Score = 580 bits (642), Expect = 1e-160 Identities = 702/950 (74%), Gaps = 8/950 (1%) Strand=Plus/Plus Query 181836 GGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGT 181894 || ||||||||||| |||||||||| || | ||| | ||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 181895 TGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTC 181954 ||||||| | || | ||||| || ||||| || ||||| || ||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 181955 ACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGG 182014 || | || || || || || || |||||||| || | || | || || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 182015 TCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGG 182074 | ||||||| |||||||| |||||||||| || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 182075 TCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACG 182131 ||||| | || ||||| | |||||| | | || | || || | | ||||| | Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCA 10350 Query 182132 TGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGC 182191 ||||||||||||| || ||| |||||||||| || ||||| ||| ||||| || || Sbjct 10351 TGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 10410 Query 182192 TCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTC 182251 |||||| |||| ||| ||||||| ||||| | ||||| | |||||||| || || Sbjct 10411 TCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTC 10470 Query 182252 CGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGA 182311 || | ||||| || ||||| || || || ||||||| ||| | || ||||| ||||| Sbjct 10471 TGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGA 10530 Query 182312 GCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTC 182371 ||||||||| |||||||| || || |||||||| |||||||| |||||||||| ||||| Sbjct 10531 GCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTC 10590 Query 182372 ACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGA 182431 || || ||||| ||||| |||| ||||| || ||| | || | || || || || Sbjct 10591 CCTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 10650 Query 182432 GCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGT 182491 | || || ||| | ||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 10651 AAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGT 10710 Query 182492 TGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCG 182551 || || ||||| || || || || ||||| |||||||| || |||||||| || || Sbjct 10711 AGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCG 10770 Query 182552 TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGG 182611 ||| || || |||||||| || || |||||||| || || ||||||||||| || | || Sbjct 10771 TTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGG 10830 Query 182612 TGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 182671 | || ||| ||||| |||||| | || |||||||| |||||||| || | ||||| | Sbjct 10831 TATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 10890 Query 182672 TCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGA 182731 ||| |||| ||| |||| || ||||| || | | || |||||| ||||||||||| Sbjct 10891 TCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGA 10950 Query 182732 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTG 182781 |||||||||||| ||||| || || || ||||| ||||| | ||| ||| Sbjct 10951 AGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 576 bits (638), Expect = 2e-159 Identities = 740/1012 (73%), Gaps = 10/1012 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || ||||| || || | || || Sbjct 5378 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5437 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| | ||||| || ||| Sbjct 5438 CCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 5497 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 183371 ||||| |||||| | || ||||||| | ||||| ||| ||||| | || || || || Sbjct 5498 TATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCAGT 5556 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || |||||| | | | | || ||| | ||||||| |||||||| || | || Sbjct 5557 TTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACA 5616 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| || ||| || ||||| ||| | || || || |||| |||||| || |||||||| Sbjct 5617 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 5676 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || || | || || ||||||||| | || || |||||||||||||| | || | Sbjct 5677 CGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATT 5736 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || ||||||| ||| |||||||||||||| ||||||||| Sbjct 5737 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 5796 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || ||||| || ||||||||| ||||||||||| || ||||| || || ||||| || Sbjct 5797 GATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTAT 5856 Query 183672 CTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCA 183728 ||| ||| |||| || |||| ||||||| || || ||||| || ||||| || || Sbjct 5857 ATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCA 5913 Query 183729 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCAC 183788 ||||||||| ||||| ||| || | || | || || || | ||||| ||||||| || Sbjct 5914 TATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTAC 5973 Query 183789 AGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTC 183848 ||||| ||||| || | ||||||||| || ||||| |||||| || ||| | | Sbjct 5974 CGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCC 6033 Query 183849 CACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTT 183908 ||||||| ||||| || ||||| ||||| || || || || || ||||| |||||||| Sbjct 6034 AACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 6093 Query 183909 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183968 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 6094 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 6153 Query 183969 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTT-GCTCTTAATCTTCGTGCTTATG 184027 ||| | ||| | | || |||| | | | ||||| ||||| || || || || |||| Sbjct 6154 CGGTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATG 6212 Query 184028 ATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAA 184087 | || || ||| || ||| | ||||| |||||||| |||||||||||||||||||| | Sbjct 6213 ACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCA 6272 Query 184088 AGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATG 184147 | || || ||| | |||||||| | ||||| ||| | || || ||||| || |||| Sbjct 6273 AAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 6332 Query 184148 AGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 | || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 6333 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATG 6384 >seq9596 Length=34882 Score = 174 bits (192), Expect = 2e-38 Identities = 214/290 (74%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 183911 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183970 ||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | | Sbjct 5356 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 5415 Query 183971 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTT-GCTCTTAATCTTCGTGCTTATGAT 184029 || | ||| | | || |||| | | | | ||| ||||| || || || || ||||| Sbjct 5416 GTTTATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGAC 5474 Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089 || || ||| || ||| | ||||| |||||||| |||||||||||||||||||| || Sbjct 5475 TTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAA 5534 Query 184090 AACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAG 184149 || || ||| | |||||||| | ||||| ||| | || || ||||| || ||||| Sbjct 5535 AATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 5594 Query 184150 AATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || |||||| ||| Sbjct 5595 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAATG 5644 >seq5685 Length=160749 Score = 158 bits (174), Expect = 1e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 182547 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCA 182606 || ||||| || || ||||||||| || |||||| | || || || ||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 182607 CTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTT 182666 | ||| || ||| ||||| |||||| | || |||||||| |||||||| ||| | || Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 182667 GATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGT 182726 ||| |||| ||| |||| |||| || | || ||| | | || |||||| |||||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 182727 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTG 182781 | ||||||||||| ||| ||||| || || || ||||| ||||| | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq13284 Length=8732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 183407 TGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGAC 183466 ||||||| |||||||| | | |||| || | || | ||| ||| | || | | Sbjct 2528 TGTTACTATGGGGTCCAAAAGCATAAGGAGATCGTACTCGTTAGTGTCAATTAGGCAGTC 2469 Query 183467 TCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGT 183526 | |||| |||||| || ||||| | || || || || ||||||||| | || || | Sbjct 2468 TGTGGACTTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAAT 2409 Query 183527 TTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTA 183586 |||||||||||| | || | || ||||| ||||| || || |||| || ||| | Sbjct 2408 TTGAACTTGCTCAATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGCTCCAA 2349 Query 183587 TTGCTGTTTTTGT 183599 ||||||||||||| Sbjct 2348 TTGCTGTTTTTGT 2336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611388959192800