Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq5990 623 1e-173 seq40156 569 2e-157 seq6232 196 5e-45 seq9596 174 2e-38 seq5685 141 1e-28 seq4685 96.9 4e-15 seq13182 91.5 2e-13 seq13284 89.7 6e-13 >seq5990 Length=34798 Score = 623 bits (690), Expect = 1e-173 Identities = 717/962 (75%), Gaps = 2/962 (0%) Strand=Plus/Plus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 |||| |||||| | || ||||| |||||| | |||||||| || | |||| || Sbjct 10040 AACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 10099 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| ||| ||||| ||| |||| || ||||| ||||||||||||||||| Sbjct 10100 -TCTGTATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGA 10158 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | ||||| || || || || |||||||| | |||| | Sbjct 10159 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 10218 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || ||||||| || || || |||||||||| || | |||||||| Sbjct 10219 TTCTGCAGCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATG 10278 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||| || |||||||| || | |||| | |||||| | | ||||||||||| Sbjct 10279 GTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 10338 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 || ||||||| |||||||||||| || ||| || |||||||| ||||||||| || Sbjct 10339 TTATATGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGT 10398 Query 165150 AGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCA 165209 |||||| || || || |||| ||| | || |||||| || | ||||| | ||||| Sbjct 10399 TGCATATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCA 10458 Query 165210 AGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGT 165269 ||| || || ||||| ||||||||||| || || ||||||||||| |||| ||| | || Sbjct 10459 AGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 10518 Query 165270 CTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 165329 ||||| || || || ||||| |||||||| || || |||||| | || || ||||| || Sbjct 10519 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 10578 Query 165330 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCG 165389 ||||| || || || ||| |||||||||||| | | || ||||| | || | Sbjct 10579 ATTCGACGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAG 10638 Query 165390 CGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGAC 165449 || || || |||| || | ||| | ||||| | || || ||||| ||||| || Sbjct 10639 GGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 10698 Query 165450 CTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTT 165509 ||||| ||||| ||||| || || || || || || | ||||||||||| || || Sbjct 10699 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTT 10758 Query 165510 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTT 165569 ||||||||| ||||| | || |||||||| || || ||||||||||| ||||||||||| Sbjct 10759 CAACAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTT 10818 Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629 ||||||| | ||| | ||||| ||||| |||||| | || |||||||| |||||||| || Sbjct 10819 CACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATC 10878 Query 165630 TATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGG 165689 | | ||||||||||| | | || ||| |||||| | || | || |||||| Sbjct 10879 TGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAA 10938 Query 165690 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749 || |||||||||||||||||||| ||||| ||||| || ||||| || ||| | ||| | Sbjct 10939 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTC 10998 Query 165750 TG 165751 || Sbjct 10999 TG 11000 >seq40156 Length=57058 Score = 569 bits (630), Expect = 2e-157 Identities = 725/990 (73%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| ||||||| | || Sbjct 5396 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCG 5455 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| | || || || || || || || |||||||| |||||| | || Sbjct 5456 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACACATGGATTGGCG 5515 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369 || ||| |||| || ||||| ||| | || ||||||||||||||||| || || Sbjct 5516 AGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCGGCAGTTTCTACTCCTGCTAATAG 5574 Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 166429 | | | || ||| | | | || |||||||| || || ||||| ||||| | || Sbjct 5575 TTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACAAGGAGATTTTACTCGTTG 5634 Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGG 166489 ||| ||| | || || || ||| | ||||||||||||||||| ||||| | ||||| || Sbjct 5635 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGG 5694 Query 166490 TTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAA 166548 ||||||| | || || |||||| | ||||| ||| | | | || || || ||||||| Sbjct 5695 TTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 5753 Query 166549 TCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 166608 |||| || |||| ||| |||||||| || ||| ||| || || || || || || |||| Sbjct 5754 TCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGGTC 5813 Query 166609 AATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTT 166668 | || ||||||| || || || ||| || ||| |||| || || |||||| |||| | Sbjct 5814 AGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTATATTTCGATTCATCCTCT 5873 Query 166669 TCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTA 166728 | | ||||| || || || |||||| |||||||||||||||||||||| || || ||| Sbjct 5874 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCGGGTG 5933 Query 166729 TTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATC 166788 | | || | ||| | || | || || ||||||| ||| ||||| || ||| | | | Sbjct 5934 TATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTG 5993 Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 |||||||||| |||||||| ||| || || || | ||||||| ||||||||| | Sbjct 5994 AAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTT 6053 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 |||||||||| || || ||||||| |||||| || ||||| || |||| ||| |||| Sbjct 6054 ATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 6113 Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCA 166968 | | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 6114 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 6173 Query 166969 TCGGTATTATTGGTCTT-GCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTA 167027 | || | || | | ||| ||||| ||||| || || |||||||| ||||| || ||| | Sbjct 6174 TTGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGACTTCGTTTCTCAGGAAATC 6232 Query 167028 AGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAG 167087 | ||||| || |||||||| ||||| || ||||| ||||| || ||||| || ||||| Sbjct 6233 CGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATATTCTTTTAAATGAA 6292 Query 167088 GGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAA 167147 || || ||| |||||||||| || ||||| |||||||| | | |||||||||| Sbjct 6293 GGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 6352 Query 167148 GAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||| || | || |||||||| ||| Sbjct 6353 GAGGTTCTACCCCGTGGAAACGCTCTTTAA 6382 >seq6232 Length=104065 Score = 196 bits (216), Expect = 5e-45 Identities = 231/310 (75%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| | || ||||| || ||| | |||||||| || | ||| || Sbjct 82867 AACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGTAACT 82808 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| ||| ||||| |||||||| || ||||| ||||||||||||||||| Sbjct 82807 -TCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGA 82749 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | ||||| || || || || |||||||| | |||| | Sbjct 82748 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 82689 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || | ||||| || || || |||||||||| || | |||||||| Sbjct 82688 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAATG 82629 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||| | ||||||||| || | |||| | |||||| | | ||||||||||| Sbjct 82628 GTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 82569 Query 165090 CTACATGGGT 165099 || |||||| Sbjct 82568 TTATATGGGT 82559 >seq9596 Length=34882 Score = 174 bits (192), Expect = 2e-38 Identities = 211/285 (74%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 166894 TTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTC 166953 |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 166954 TGTGGACAAGTTCCATCGGTATTATTGGTCTT-GCTCTCAACCTTCGTGCTTATGACTTT 167012 | |||| ||| | | || | || | | ||| ||||| ||||| || || |||||||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 167013 GTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAAC 167072 ||||| || ||| | | ||||| || |||||||| ||||| || ||||| ||||| || Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 167073 ATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGT 167132 ||||| || ||||| || || ||| |||||||||| || ||||| |||||||| | Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 167133 TTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | |||||||||| |||||||| || | || ||| |||| ||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAA 5642 >seq5685 Length=160749 Score = 141 bits (156), Expect = 1e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 165515 ATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTG 165574 |||| ||||| | || |||||||| || |||||| |||| ||||| |||||||| | Sbjct 78493 ATTCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCG 78552 Query 165575 CTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTG 165634 || | ||| | | ||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 78553 CTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAG 78612 Query 165635 TTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGG 165694 |||||||||| | || ||| | || ||| || | || |||||| || | Sbjct 78613 TTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTG 78672 Query 165695 GTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCTGCCG 165754 ||| ||||||||||| ||| ||||| ||||| || ||||| || ||| | ||| ||| || Sbjct 78673 GTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTGTCG 78732 Query 165755 A 165755 | Sbjct 78733 A 78733 >seq4685 Length=19895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 165205 GGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 165264 ||||||| ||||| ||| |||||||||||||||| || ||||||||||| |||| || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 165265 TTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATG 165312 | || ||||| | || || ||||| |||||||| || || |||||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq13182 Length=14344 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 167003 TTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTA 167062 ||||||||||||||| | ||| | ||| ||| |||||||| ||||| | ||||| Sbjct 7670 TTATGACTTTGTTTCTTAGGAAATCCATGCATTAGAAGATCCTGAATTTGAGATGTTCTA 7611 Query 167063 TACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACC 167122 ||||| || ||| | || ||||| ||||| || |||| ||||||||| ||| | | Sbjct 7610 CACCAAAAATATTAT-TTAAATGAAGGTATTTGTGCTTGTATGGCAACTCAAGATTAGCT 7552 Query 167123 TCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCT 167159 |||| | | | |||||| ||| |||||||| ||| Sbjct 7551 TCATAAAAAACTTATATTCCTTGAGGAGGTTCTACCT 7515 >seq13284 Length=8732 Score = 89.7 bits (98), Expect = 6e-13 Identities = 172/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 166337 TCTTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCT 166395 ||||| | ||||||||||||||||| | || | | | || ||| | | | || | Sbjct 2579 TCTTAACCGCGGCAGTTTCTACTCCTACTAATAGTTTAGCACACTCTTTGTTGTTACTAT 2520 Query 166396 GGGGTCCTGAGGCTCAAGGGGATT-TCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCC 166454 ||||||| | || |||| ||| | || | | ||| ||| | || | || ||| | Sbjct 2519 GGGGTCCAAAAGCATAAGGAGATCGTACTC-GTTAGTGTCAATTAGGCAGTCTGTGGACT 2461 Query 166455 TTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATC 166514 |||||||||||||| | ||||| ||||| ||||||||| | || || |||||| | Sbjct 2460 TTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTTGAACTT 2401 Query 166515 GCTC-GTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGT 166573 |||| ||| || | || || || ||||||||||| || | || ||| |||||||| Sbjct 2400 GCTCAATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGCTCCAATTGCTGT 2342 Query 166574 CTTCGTT 166580 || ||| Sbjct 2341 TTTTGTT 2335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563377870461440