Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq5990 499 4e-136 seq6232 114 2e-20 seq4685 87.8 2e-12 >seq5990 Length=34798 Score = 499 bits (552), Expect = 4e-136 Identities = 695/974 (71%), Gaps = 0/974 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| |||| | |||| | || |||| ||||| ||||| ||||||||||| Sbjct 10022 TGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 10081 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| |||||||||| || |||| || ||||| Sbjct 10082 ACCTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGAT 10141 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || || || || || ||| Sbjct 10142 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCT 10201 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| || || || |||||||| Sbjct 10202 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAATATGGGAAGCT 10261 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 | | | ||||| ||||| || || || ||||||||| | || || | | |||||| Sbjct 10262 GTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTC 10321 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| |||||||||| | |||| |||||||| Sbjct 10322 TTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATG 10381 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| |||||||| | | ||| ||||| ||||| Sbjct 10382 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTG 10441 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | ||||| | ||||| ||| || || ||||| ||||||||||| || || ||||| Sbjct 10442 ATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACT 10501 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 10502 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 10561 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | |||| || | || ||| || ||||| |||| | ||| Sbjct 10562 TTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTA 10621 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || ||| | || |||| |||| Sbjct 10622 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTC 10681 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | || Sbjct 10682 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATT 10741 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || |||||| |||| | | || |||||||| || | | ||| Sbjct 10742 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCT 10801 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| ||| | | ||||| |||| ||||| || ||| | ||||| Sbjct 10802 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGT 10861 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | ||| | ||| || ||| ||||| | Sbjct 10862 TTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAAT 10921 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || |||| | || ||||| ||||||||||| |||||||| |||||||| || || ||| Sbjct 10922 ATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTC 10981 Query 170659 CCACTTGACTTGGC 170672 || || ||||| || Sbjct 10982 CCTCTAGACTTAGC 10995 >seq6232 Length=104065 Score = 114 bits (126), Expect = 2e-20 Identities = 203/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTC 169762 |||| ||||| | ||||| | || |||| ||||| || || ||||||||||| Sbjct 82881 TAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCT 82822 Query 169763 TATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCG 169822 |||| | | | | | ||||| |||||||||| || ||||| || ||||| || | Sbjct 82821 TATTGACCGTAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTG 82762 Query 169823 ATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTG 169882 |||| || | |||||||| | || || | | || || || || || || ||||||| Sbjct 82761 ATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTG 82702 Query 169883 CAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAA 169942 | || |||| |||| || || ||| | ||||| || || || |||||||| | Sbjct 82701 CCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTT 82642 Query 169943 CTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 | | ||||| ||||| || || | |||||||||| | || || | | |||||| Sbjct 82641 CCGTTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTC 82586 >seq4685 Length=19895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 170131 GGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATG 170190 ||||| | | ||| || | || |||||||| || || || ||||| || |||||| || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 170191 TTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 | |||||||| | ||||||||||| |||||||||||||| || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582555439446400