Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq5990 587 9e-163 seq6232 156 5e-33 seq4685 91.5 2e-13 >seq5990 Length=34798 Score = 587 bits (650), Expect = 9e-163 Identities = 716/974 (74%), Gaps = 2/974 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||||||| ||||| |||||||||||||| |||||||||| Sbjct 10983 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 10924 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||||||||| | ||| | ||| ||||| || | | || ||||| || Sbjct 10923 ATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACAGATTGGTTGAAATTG 10864 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 10863 AAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 10804 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || | ||| || || | ||||||| ||||||||| |||||| ||| Sbjct 10803 ACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 10744 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 || || | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 10743 AAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 10684 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | ||| || |||||||||| ||||| | ||| | | |||| Sbjct 10683 CCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 10624 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | |||||||||| ||| |||||| | || ||||||||||||| || || Sbjct 10623 GTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGAATACACCAGCTACACCT 10564 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 10563 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 10504 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || || ||||| || ||||| || ||||| || | ||||| Sbjct 10503 AAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATGGGATAT 10444 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| ||| | ||||||||||| || || |||||| ||||| || Sbjct 10443 ATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATATGCAACAGCAATCCAAGGG 10384 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||| ||||||| ||| | | |||||| Sbjct 10383 CGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGT 10324 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| |||||| || | Sbjct 10323 AAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAACCATTCATCAACGGAA 10264 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 | |||||||| || || || || || | ||| ||||| ||| | |||| | |||| Sbjct 10263 ACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 10204 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || || |||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 10203 CCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 10144 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || | | ||| ||| ||||| || || ||||| ||| || | | || Sbjct 10143 ATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGTCAATAA 10085 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| |||| || | | |||| | | || ||| | Sbjct 10084 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTCAATGCTGGTTAT 10025 Query 84944 CCAATCACAGAAGT 84957 ||| | |||||||| Sbjct 10024 CCATTTACAGAAGT 10011 >seq6232 Length=104065 Score = 156 bits (172), Expect = 5e-33 Identities = 239/338 (71%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 84620 ACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACC 84679 |||||| ||| | | |||||| | |||||| | |||| || | |||||| ||| | Sbjct 82559 ACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCATC 82618 Query 84680 ATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAAT 84739 ||| |||| |||||| || | | |||||||| || || || || || | ||| || Sbjct 82619 ATTGTATAACCATTCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGTGCAAACCTAT 82678 Query 84740 AGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACC 84799 ||| ||| | |||| | |||||||||||| || || |||||||| | ||||| || Sbjct 82679 AGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCC 82738 Query 84800 AGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGAT 84859 || || || ||||| ||||| |||||||| || || || ||| ||| ||| ||||| || Sbjct 82739 AGAAACAGGTTCACGAATACCATCAATATCCACCGGAGGAGCAGCAATGAAAGCAATAAT 82798 Query 84860 GAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACAT 84918 || ||||| ||| | | | || || || ||||| | | |||||||| |||| | Sbjct 82799 AAATACAGA-AGTTACGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGT 82857 Query 84919 AGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 | | |||||| | |||| ||| | | | | ||||||| Sbjct 82858 AAAGACGGTTTTCAGTGCTGGTTATCTAGTTACAGAAG 82895 >seq4685 Length=19895 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 84406 ACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGA 84465 |||||||||| || |||||||||||||| || || ||||||| |||| || | |||||| Sbjct 6779 ACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGA 6838 Query 84466 ACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAA 84503 | || || || || ||||| ||||| |||| ||| ||| Sbjct 6839 AAGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAA 6876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570986849216480