Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq5990 457 3e-124 seq6232 140 1e-28 seq5685 123 7e-24 seq4685 89.7 2e-13 >seq5990 Length=34798 Score = 457 bits (506), Expect = 3e-124 Identities = 695/987 (70%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || | ||| |||| ||| || | |||||||| || || | Sbjct 10013 TTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 10072 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||| ||||| || | || Sbjct 10073 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTACTCC 10131 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || || ||||| ||||| || ||||| || ||||| || || || | |||||||| || Sbjct 10132 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAA 10191 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | || |||||||| || Sbjct 10192 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTTTTACCCAAT 10251 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||||| | | || || ||| ||||||||||||| || ||| | || ||| | Sbjct 10252 ATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGT 10311 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | ||||||||| | || ||||| ||| || |||||||||| || | | Sbjct 10312 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCCG 10371 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 ||||| ||| | || ||||| |||||||||| |||| ||| | | | || || Sbjct 10372 TCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGATGCAACTGC 10431 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||||| | ||||| | || ||||| || ||| ||| || |||||||| || || Sbjct 10432 TGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 10491 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340 ||||||||||| ||||| ||| | |||||||| || || || || || || |||||||| Sbjct 10492 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 10551 Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 ||| || ||| ||||| ||||| || |||| || | || ||| ||||||||| || Sbjct 10552 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGCTATGCATGG 10611 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 | ||||| ||||| | || ||||| ||||| | | || || | || Sbjct 10612 TTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 10671 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 26520 || | || || ||||| ||||| || |||||||| || ||||| || || || ||||| Sbjct 10672 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 10731 Query 26521 GAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGC 26580 |||| ||||| || ||||| ||||| || || |||||| | |||||||| || || Sbjct 10732 CCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 10791 Query 26581 TACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAA 26640 ||||||| || || || || ||| | || || | |||||| |||| ||||| || || Sbjct 10792 GGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAA 10851 Query 26641 CCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTAC 26700 | |||||||||| || || ||||| || ||||| ||| | | || | |||| ||| Sbjct 10852 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTAATAC 10911 Query 26701 ATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGC 26760 |||||| || | | || || |||||||| || | ||||||||||| || |||||||| Sbjct 10912 CTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 10971 Query 26761 TCATAACTTTCCACTTGACTTAGCATC 26787 |||||| || || || |||||||| || Sbjct 10972 TCATAATTTCCCTCTAGACTTAGCTTC 10998 >seq6232 Length=104065 Score = 140 bits (154), Expect = 1e-28 Identities = 218/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || ||||| |||||||| || | |||||||| || || | ||||| || |||| Sbjct 82879 ACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCCTACCTTA 82820 Query 25877 CTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGA 25935 | | | ||| | ||| ||||| |||| ||||| || || || || || ||||| || Sbjct 82819 TTGACCGTAACTTC-TGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGA 82761 Query 25936 TGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 ||| || ||||| || ||||| || || || | |||||||| ||||| || || || || Sbjct 82760 TGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGC 82701 Query 25996 AGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCAC 26055 | | || | ||| || || || | || |||||||| || ||||||||||| | Sbjct 82700 CATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTC 82641 Query 26056 ACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAAT 26115 | || || ||| ||||||||| || || ||| | || ||| | | ||||||||| | Sbjct 82640 CGTTGATGAATGGTTATACAATGATGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 82581 Query 26116 AGGAGTAGC 26124 || ||||| Sbjct 82580 TGGTGTAGC 82572 >seq5685 Length=160749 Score = 123 bits (136), Expect = 7e-24 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 26558 CGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATG 26617 |||||| | |||||||| ||| ||||||| | || || || ||| | || || | Sbjct 78498 CGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTA 78557 Query 26618 GGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||||| ||| ||||| || ||| |||||||||| || || ||||| || ||||| ||| Sbjct 78558 GGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 78617 Query 26678 -GTTAA---TGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGG 26733 || || || | ||||||||| || |||| | | || || |||||||| || Sbjct 78618 AGTCAAGGTTGTGTAATTAATACCTA----GGTTGATATTATTAATCGTGCTAACCTTGG 78673 Query 26734 CTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATC 26787 |||||||||| || |||||||||||||| || || || |||||||| || Sbjct 78674 TACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTC 78727 >seq4685 Length=19895 Score = 89.7 bits (98), Expect = 2e-13 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 26302 || |||| |||||| | |||| ||||||||||| || ||||||||||| ||||| || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 26303 TTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATG--GCTGGT 26356 | |||||||| | || || || || || ||||||||||| || ||| |||||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATGTAGCTGGT 6772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146656433149344