Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq5990 484 2e-132 seq6232 150 5e-32 seq4685 98.7 3e-16 seq5685 95.1 4e-15 >seq5990 Length=34798 Score = 484 bits (536), Expect = 2e-132 Identities = 672/941 (71%), Gaps = 0/941 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| || ||||| || || || ||||| ||||||||||||||||| || | || Sbjct 10995 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 10936 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 ||||| |||| ||| | |||||| || | || || | |||||| || || Sbjct 10935 GCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACAGAT 10876 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || ||||| || || || || | || |||||||||||| || || | ||| || | | Sbjct 10875 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 10816 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | || |||||||| || ||||||||||||||| || ||| || || Sbjct 10815 CAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 10756 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 |||||||| ||||| || | || ||||| || |||||||| || || || ||||| || Sbjct 10755 CTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 10696 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||| ||||| |||||| | || || | ||| ||||||| | || ||||| | Sbjct 10695 TCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 10636 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || | ||||| || | | || ||||||||| ||||| | || ||||||| Sbjct 10635 ATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGAATACA 10576 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || || ||||| | ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 10575 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 10516 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | ||| || |||||||| || ||||| || ||||||||||| ||||| || || ||||| Sbjct 10515 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 10456 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 |||| || || | ||||| |||||| ||| | ||||| || |||||||| || ||| Sbjct 10455 CCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATATGCAACA 10396 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 ||||| || | ||||||||| | ||||||||||||| | | |||| ||| Sbjct 10395 GCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATATAACAA 10336 Query 36633 GAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 36692 | | ||||| | ||||| | ||||| || | ||| || || || || |||||||| Sbjct 10335 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAACCAT 10276 Query 36693 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGAT 36752 || || | || |||||||||| |||||||| ||||||| ||| || || || | Sbjct 10275 TCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCAGAAGTA 10216 Query 36753 GGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 || | || || ||||| || || || ||||| || |||| | ||| || ||||| ||| Sbjct 10215 GGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 10156 Query 36813 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 36872 ||||||||||| |||||||| ||||| | ||||| || ||||| | |||| | | | Sbjct 10155 CGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACAGAAGTT 10096 Query 36873 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 36913 || || || | | ||||||||| | || |||||||| || Sbjct 10095 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 10055 >seq6232 Length=104065 Score = 150 bits (166), Expect = 5e-32 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| || | ||| || || | || |||||||| || || | || || Sbjct 82587 AAGTGTAGAACAATTAGCTCATAAGGACCATCATTGTATAACCATTCATCAACGGAACCA 82646 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||| |||||||| ||||| | ||| || || || | || | || || ||| Sbjct 82647 GCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCA 82706 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||| Sbjct 82707 GAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATA 82766 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887 ||||| ||||| ||||||| || ||||| | |||| | | | | || || | | | Sbjct 82767 TCCACCGGAGGAGCAGCAATGAAAGCAATAATAAATACAGAAGTTACGGTCAATAAGGTA 82826 Query 36888 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 36947 |||||||| | || |||||||| || | || || ||||| | || || || | | || Sbjct 82827 GGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCTAG 82886 Query 36948 TCACATAA 36955 | ||| || Sbjct 82887 TTACAGAA 82894 >seq4685 Length=19895 Score = 98.7 bits (108), Expect = 3e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 36407 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 36466 ||| || || || ||||||||||| ||||| || |||| || |||| || || ||||| Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 36467 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 36515 ||| || ||||| |||||||||||||||| ||| ||||| |||| ||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACCA 6888 >seq5685 Length=160749 Score = 95.1 bits (104), Expect = 4e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| || ||||| || || || ||||| ||| ||||||||||| | || | || Sbjct 78724 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAAGGTTA 78665 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 ||||| |||| ||| ||| || | || | || | || | |||||| || || Sbjct 78664 GCACGATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACTACGGAT 78605 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || ||||| || || || || | || |||||||||||| || || | |||||| | | Sbjct 78604 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTGAAC 78545 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 || || | | |||||||| ||||||||||||||| Sbjct 78544 CAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATGTAAA 78503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150382655443224