Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq5990 486 6e-133 seq6232 132 1e-26 seq4685 100 9e-17 seq5685 98.7 3e-16 >seq5990 Length=34798 Score = 486 bits (538), Expect = 6e-133 Identities = 705/993 (71%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || || ||||| || |||||||| ||||| ||||| ||||||||||||||||| Sbjct 10995 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 10936 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 ||||| || | | || ||||| || || | ||| | ||||| || || Sbjct 10935 GCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACAGAT 10876 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || ||||| || || || || | || |||||||||||| ||| || | || || | | Sbjct 10875 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 10816 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | || || ||||||| || ||||||||||||||| ||| |||||| || Sbjct 10815 CAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 10756 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 |||||||| ||||| || | || ||||| || |||||||| || || || ||||| ||| Sbjct 10755 CTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 10696 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||||||||| |||||| | || || | ||| ||| | | || ||||| | Sbjct 10695 TCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 10636 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | |||||| || | | |||||||||||| ||| | | || ||||||| Sbjct 10635 ATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGAATACA 10576 Query 5615 CCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACG 5674 ||||| ||||| | |||||| || || ||||||||||| ||||| || ||||||||||| Sbjct 10575 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 10516 Query 5675 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGT 5734 | ||| ||||| ||||||||||| || || ||||||||||| ||| || ||||| || Sbjct 10515 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 10456 Query 5735 CCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTAC 5793 || | || |||| || || || | ||| | | | ||||| || ||||||||||| || Sbjct 10455 CCAATGGGATATATCAAGAAAACAGCAGTTGCAT-CAGCAACTGGAGCTGAATATGCAAC 10397 Query 5794 GCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGC 5853 |||||| || ||||| |||| | | ||||||||||||| | | |||| ||| Sbjct 10396 AGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATATAACA 10337 Query 5854 TGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCA 5913 || | ||||| | |||||| | || | || | || || || |||||||| | ||| Sbjct 10336 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAACCA 10277 Query 5914 TTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCT 5973 |||||| | | |||||||| || || || ||||| || || || || || | Sbjct 10276 TTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCAGAAGT 10217 Query 5974 GGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTC 6033 || | || ||| || || || || || ||||| || ||||||||||| | || ||||| Sbjct 10216 AGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTC 10157 Query 6034 ACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGT 6093 ||| || || || || || ||||| || | ||| | ||| || | |||||| ||| ||| Sbjct 10156 ACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACAGAAGT 10097 Query 6094 TGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTT 6153 |||||| || | | || ||||| || ||||||||||| || | || || |||| | Sbjct 10096 TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGATGGTTTTC 10037 Query 6154 GGTGCTAGTAACCCAGTCACAGAACTTATCCCA 6186 |||| || | ||| | |||||| | | |||| Sbjct 10036 AATGCTGGTTATCCATTTACAGAAGTAACCCCA 10004 >seq6232 Length=104065 Score = 132 bits (146), Expect = 1e-26 Identities = 220/318 (69%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||||| | |||||| | || | || | || || || ||||||| | ||||||||| Sbjct 82577 ACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCATCATTGTATAACCATTCATC 82636 Query 5920 GAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTAC 5979 | | |||||||| || || || ||||| || || || || || | || | Sbjct 82637 AACGGAACCAGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAAT 82696 Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| || || || || || ||||| || ||||||||||| | || |||||||| || Sbjct 82697 AATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAAT 82756 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || || || || || ||||| | ||| || | |||||| ||| |||| |||| Sbjct 82757 ACCATCAATATCCACCGGAGGAGCAGCAATGAAAGCAATAATAAATACAGAAGTTACGGT 82816 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCT 6159 || | | || ||||| || || |||||||| || | || || ||||| | ||||| Sbjct 82817 CAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCAGTGCT 82876 Query 6160 AGTAACCCAGTCACAGAA 6177 || | | ||| |||||| Sbjct 82877 GGTTATCTAGTTACAGAA 82894 >seq4685 Length=19895 Score = 100 bits (110), Expect = 9e-17 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 5629 CATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAA 5688 |||||| || || ||||||||||| ||||| || |||||||||| | || ||||| || Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 5689 AGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 ||||||||| || |||||||||||||||| | |||||| | || || Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACC 6887 >seq5685 Length=160749 Score = 98.7 bits (108), Expect = 3e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || || ||||| || |||||||| ||||| |||| |||||| |||||||||| Sbjct 78724 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAAGGTTA 78665 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 ||||| || | | ||| || | || || | | ||| | ||||| || || Sbjct 78664 GCACGATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACTACGGAT 78605 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || ||||| || || || || | || |||||||||||| ||| || | || ||| | | Sbjct 78604 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTGAAC 78545 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416 || || | || | ||||||| ||||||||||||||| Sbjct 78544 CAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATGTAAA 78503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152576808656616