Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq5990 484 2e-132 seq6232 150 5e-32 seq5685 107 6e-19 seq4685 98.7 3e-16 seq3690 91.5 4e-14 seq2753 87.8 5e-13 >seq5990 Length=34798 Score = 484 bits (536), Expect = 2e-132 Identities = 675/946 (71%), Gaps = 0/946 (0%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| |||||||| |||||||| || || || ||||| ||||||||||||||||| || | Sbjct 11000 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 10941 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 || ||||| |||| ||| | |||||| || | || || | |||||| | Sbjct 10940 GGTTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTA 10881 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 | || || ||||| || || || || | || |||||||||||| || || | ||| | Sbjct 10880 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 10821 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | | ||| || | || |||||||| || ||||||||||||||| ||| ||| | Sbjct 10820 TGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGT 10761 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || |||||||| ||||| || | || ||||| || |||||||| || || || |||| Sbjct 10760 TGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 10701 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || ||||| ||||| |||||| | || || | ||| ||||||| | || |||| Sbjct 10700 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTT 10641 Query 25808 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 25867 | | || | ||||| || | | || ||||||||| ||||| | || ||| Sbjct 10640 CCCTGATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGA 10581 Query 25868 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 25927 |||| || || ||||| | ||| || || || ||||||||||| ||||| || ||||| | Sbjct 10580 ATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 10521 Query 25928 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 25987 | |||| ||| || |||||||| || ||||| || ||||||||||| ||||| || || | Sbjct 10520 ATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTC 10461 Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047 |||| |||| || || | ||||| |||||| ||| | ||||| || |||||||| | Sbjct 10460 CTTGACCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATATG 10401 Query 26048 CTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 26107 | ||| ||||| || | ||| ||||| | ||||||||||||| | | |||| | Sbjct 10400 CAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATAT 10341 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 || | | || | | ||||| | ||||| || | ||| || || || || || | Sbjct 10340 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATA 10281 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 |||| || || | || |||||||||| |||||||| ||||||| ||| || || || Sbjct 10280 ACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCAG 10221 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | | || | || || || || || || || ||||| || |||| | ||| || |||| Sbjct 10220 AAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAG 10161 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 | |||||||||||||| |||||||| ||||| | ||||| || ||||| | |||| | | Sbjct 10160 GTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACAG 10101 Query 26348 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393 ||| || || | | ||||||||| | || |||||||| || Sbjct 10100 AAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 10055 >seq6232 Length=104065 Score = 150 bits (166), Expect = 5e-32 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| || | ||| || ||| | || || ||||| || || | || || Sbjct 82587 AAGTGTAGAACAATTAGCTCATAAGGACCATCATTGTATAACCATTCATCAACGGAACCA 82646 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||| |||||||| ||||| | ||| || || ||| | || | || || || Sbjct 82647 GCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCA 82706 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| ||| Sbjct 82707 GAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATA 82766 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 ||||| ||||| ||||||| || ||||| | |||| | | | | || || | | | Sbjct 82767 TCCACCGGAGGAGCAGCAATGAAAGCAATAATAAATACAGAAGTTACGGTCAATAAGGTA 82826 Query 26368 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 26427 |||||||| | || |||||||| || | || || ||||| | || || || | | || Sbjct 82827 GGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCTAG 82886 Query 26428 TCACATAA 26435 | ||| || Sbjct 82887 TTACAGAA 82894 >seq5685 Length=160749 Score = 107 bits (118), Expect = 6e-19 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| |||||||| |||||||| || || || ||||| ||| ||||||||||| | || | Sbjct 78729 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAA 78670 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 || ||||| |||| ||| ||| || | || | || | || | |||||| | Sbjct 78669 GGTTAGCACGATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACTA 78610 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 | || || ||||| || || || || | || |||||||||||| || || | ||||| Sbjct 78609 CGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGG 78550 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 25674 | | ||| || | | |||||||| ||||||||||||||| Sbjct 78549 TGAACCAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATGTAAA 78503 >seq4685 Length=19895 Score = 98.7 bits (108), Expect = 3e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 25887 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 25946 ||| || || || ||||||||||| ||||| || |||| || |||| || || ||||| Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 25947 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 25995 ||| || ||||| |||||||||||||||| ||| ||||| |||| ||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACCA 6888 >seq3690 Length=176667 Score = 91.5 bits (100), Expect = 4e-14 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| |||| |||||||| |||||||| || || || |||| ||||||||||||||||| Sbjct 116724 TCAACAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACATTCATGCATAACTTCCATA 116783 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAA 25536 || | || ||| |||||| ||| ||||||||| Sbjct 116784 CCAAGGTTAGCATGGTTAATAATATCAGCCCAA 116816 >seq2753 Length=60576 Score = 87.8 bits (96), Expect = 5e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| |||| |||||||| |||||||| || || || |||| ||||||||||||||||| Sbjct 53318 TCAACAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACATTCATGCATAACTTCCATA 53377 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAA 25536 || | || ||| |||||| ||| |||| |||| Sbjct 53378 CCAAGGTTAGCATGGTTAATAATATCAGTCCAA 53410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151921121471856