Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq5990 567 8e-157 seq6232 134 2e-26 seq5685 114 1e-20 seq4685 91.5 2e-13 >seq5990 Length=34798 Score = 567 bits (628), Expect = 8e-157 Identities = 696/949 (73%), Gaps = 6/949 (1%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || ||| Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATT 10114 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| | |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 10115 GCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 10174 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || || || || || |||||||| | |||||| ||| ||||| ||| Sbjct 10175 CTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 10234 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 ||||||| || || || |||||||| | | ||||||| ||||| || ||||| || Sbjct 10235 TTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGT 10294 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 162837 |||| | || | || | |||||| | | || | ||| | | | |||| | Sbjct 10295 CCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCAT 10351 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 ||||||||||| || ||| |||||||||| |||||||| ||||||||| || || Sbjct 10352 GAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 10411 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 ||||| ||| ||| ||||| |||||| | ||||| | |||||||| || ||| Sbjct 10412 CCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCT 10471 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 |||| |||||||| || |||||||||||||| |||| |||| | || ||||| || ||| Sbjct 10472 GACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 10531 Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077 ||||||||||| |||||||| || || ||| | || || || |||||||||| ||||| Sbjct 10532 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCC 10591 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 || || ||||||||||| |||| | || |||||| | | ||||| ||||| || || Sbjct 10592 CTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 10651 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | || || ||| | ||||| | ||||| ||||| ||||| ||||| || || || Sbjct 10652 AATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 10711 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 ||||||||||| || ||||| || ||||| ||||| ||||| ||||||||| || ||| Sbjct 10712 GCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 10771 Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317 || | || |||||||| || || | ||||| || | |||||||||||||| | ||| Sbjct 10772 TCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGT 10831 Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCA 163377 | |||||||| |||||| | || |||||||| ||||||||||| || ||||| Sbjct 10832 ATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 10891 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 ||| | || ||| ||| ||||| |||| |||| | || |||||||||||| Sbjct 10892 CAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAA 10951 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 |||||||| || ||||||||||| || ||||| || ||| | ||| ||| Sbjct 10952 GTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq6232 Length=104065 Score = 134 bits (148), Expect = 2e-26 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| || || |||||||||||| ||| | | | | | || || || ||| Sbjct 82852 GGATGGTTTGGCGTTTTGATGATCCCTACCTTATTGACCGTAACTTCTGTATTTATTATT 82793 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || ||||| || ||||| |||||||| | ||||||||| | || || Sbjct 82792 GCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 82733 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || || || || || |||||||| | |||||| ||| ||||| ||| Sbjct 82732 CTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 82673 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || || |||||||| | | ||||||| ||||| || |||| ||| Sbjct 82672 TTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAATGGTTATACAATGATGGT 82613 Query 162781 CCTT 162784 |||| Sbjct 82612 CCTT 82609 >seq5685 Length=160749 Score = 114 bits (126), Expect = 1e-20 Identities = 169/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 163252 TCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCA 163311 || ||||| | || ||||||||| || | ||| | || | || |||||||| || Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 163312 ATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTT 163371 | ||| | |||||||| |||||| | || |||||||| |||||||||||||| ||| Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 163372 GA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT 163428 || |||| || || ||| ||| | || ||||| |||| | || ||| Sbjct 78615 GATAGTCAAGGTTGT---GTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTT 78671 Query 163429 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 |||| ||||||||||| || ||||||||||| || ||||| || ||| | ||| ||| Sbjct 78672 GGTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 162940 GGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATG 162999 ||||||| ||| ||| | | ||||||||||| |||||||||||||| |||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 163000 TTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATG 163047 | || ||||| | |||||||||||||| |||||||| || || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552807179084640