Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq40156 518 4e-142 seq5990 475 4e-129 seq9596 176 5e-39 seq5685 114 1e-20 seq4685 84.2 2e-11 >seq40156 Length=57058 Score = 518 bits (574), Expect = 4e-142 Identities = 725/1009 (72%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || || || |||||||| || ||||| || || | || || Sbjct 5378 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5437 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||||||| | || | || |||||| |||| || ||| | ||||| || ||| Sbjct 5438 CCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 5497 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797 || || ||||| | || ||||||| | ||||| ||| ||||| | || || || || Sbjct 5498 TATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCAGT 5556 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || |||||| || | | | || ||| | | |||| |||||||| || | || Sbjct 5557 TTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACA 5616 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||||| ||| | || || || |||| ||| || ||||||||||| Sbjct 5617 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 5676 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTA 164976 || |||| ||||| ||||||||| | || || ||||| || || || ||| | | Sbjct 5677 CGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 5735 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | || ||||| ||||| || || ||||||| ||| |||||||||||||| || |||| Sbjct 5736 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCC 5795 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 | || || || || |||||||| ||||||| || || || ||||| || ||||| | Sbjct 5796 TGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTA 5855 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||| ||||| | | || | ||||| || || || ||||| | ||||| || |||| Sbjct 5856 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 5915 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 ||||||| ||||| ||| | ||||| | || | |||| ||||||||||| | || | Sbjct 5916 TGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCG 5975 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | |||||||| |||| || ||||| || |||||||| || || ||| | | | Sbjct 5976 TAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAA 6035 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 165336 | || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| | Sbjct 6036 CTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTG 6095 Query 165337 GCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 165396 | |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | | Sbjct 6096 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 6155 Query 165397 GTCTTTGGACATCCTCTATTGGCATTATTGGTCTT-GCTCTCAACCTTCGTGCTTACGAT 165455 || | |||| || |||| | || | | ||| ||||| ||||| || || || || Sbjct 6156 GTTTATGGATGAGTGCTCTTGG-AGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGAC 6214 Query 165456 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 165515 ||||| |||||| ||| | ||||| |||||||| ||||||||||| |||||||||||| Sbjct 6215 TTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAA 6274 Query 165516 AACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAA 165575 || || || || |||||||| | ||||||||| |||| || ||||| || |||||| Sbjct 6275 AATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6334 Query 165576 AACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 ||| |||| ||||| || || || | || | || ||||| ||||||| Sbjct 6335 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 6383 >seq5990 Length=34798 Score = 475 bits (526), Expect = 4e-129 Identities = 675/947 (71%), Gaps = 2/947 (0%) Strand=Plus/Plus Query 162934 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 162992 || ||||| || || ||||||| || || | ||| | |||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 162993 CGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTC 163052 || ||| | ||| |||| || ||||| ||||| || || ||||| || || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 163053 ACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 163112 || | || || || || || || |||||||| || |||| |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 163113 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 163172 | ||||||| || || || |||||||| | || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 163173 TCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGA 163232 ||||| | || | || | |||||| | | || | | |||||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 163233 ATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACC 163292 ||||||||| | || ||||||||||||| ||||| ||| ||||| || || || Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 163293 TGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 163352 ||||| | ||| | || || ||| || | ||||| | |||||||| || ||||| Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 163353 CGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCA 163412 || ||||| || || || ||||| || ||||||| |||| |||| ||||| || ||||| Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 163413 CAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACT 163472 ||||||||| |||||||| || || ||||| || || |||||||| |||| || || || Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 163473 CTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAAC 163532 ||| || |||||||| | | || || ||| | || | || || || |||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 10653 Query 163533 TGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGC 163592 ||| || ||| | ||||||| || |||||||| ||||| || || || ||||| || Sbjct 10654 TGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 10713 Query 163593 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAG 163652 || ||||| || || || || ||||| ||||||||||| |||||||| | Sbjct 10714 TGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTC 10773 Query 163653 TCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGT 163712 | | || |||||||| || || |||||||| || || |||||||| ||||| | || | Sbjct 10774 TTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 10833 Query 163713 AAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCA 163772 ||||| ||||| |||||| | || |||||||| |||||||| || | ||||| |||| Sbjct 10834 CAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 10893 Query 163773 GGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGT 163832 |||| ||| | || || ||||| | | |||| || ||| || ||||||||||| Sbjct 10894 AGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGT 10953 Query 163833 TATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTG 163879 ||||||||| ||||| || || || ||||| || || | ||| ||| Sbjct 10954 TATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq9596 Length=34882 Score = 176 bits (194), Expect = 5e-39 Identities = 212/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 165340 TTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTC 165399 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 165400 TTTGGACATCCTCTATTGGCATTATTGGTCTTG-CTCTCAACCTTCGTGCTTACGATTTC 165458 | |||| || |||| | || | | |||| |||| ||||| || || || || ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 165459 GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAAC 165518 || |||||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 165519 ATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAAC 165578 || || || |||||||| | ||||||||| |||| || ||||| || ||||||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 165579 TTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 |||| ||||| || || || | || | || ||| | ||||||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAAT 5643 >seq5685 Length=160749 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 163657 CACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGC 163716 || |||||||| || |||||| | || || || ||||| || || | || | | | Sbjct 78507 CATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTAGGTATCAAC 78566 Query 163717 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163776 || ||||| |||||| | || |||||||| |||||||| ||| | ||||| |||| ||| Sbjct 78567 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 78626 Query 163777 CGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATG 163836 |||| | || || | || || | |||| || ||| || |||| |||||||||| Sbjct 78627 TGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTACGGAAGTTATG 78686 Query 163837 CATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTG 163879 | ||| ||||| || || || ||||| || || | ||| ||| Sbjct 78687 CGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 163333 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATG 163392 ||||||| ||| ||| | | ||||| ||||| || ||||| || ||||||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 163393 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGT 163441 |||| ||||| | |||||||||||||| |||||||| || || |||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATGT 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562926896941280