Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12080 176 8e-39 >seq12080 Length=19512 Score = 176 bits (194), Expect = 8e-39 Identities = 436/658 (66%), Gaps = 14/658 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| ||||||| | ||| || || | || || ||| ||||| ||| | Sbjct 8632 AAACTCCCTCTCTATATCCACCGCGTCGCGGACGATAGCCTTCACGCGCTCCTCGCTCAG 8573 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || ||||||| | | || ||||||| ||| || || || | ||| | |||||||| Sbjct 8572 CTTCTTGCGCAAGAGAGTG---TAGAGCAGGCACGCGAAATCGCAGTGGAGACCTTCGTC 8516 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | ||||||||||| | || ||||| | ||| | || ||| ||||| Sbjct 8515 TCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTTTTTAGCCA 8456 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 || || || ||| || |||||||| ||||| || || ||||| ||| |||| Sbjct 8455 AAATATCGCGCAGAAGCTTCCGGAGAAGAAAATGCCTTCGACGCAAGCGAAGGCGATGAG 8396 Query 48280 CCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||| || |||| | | |||||| || ||||| || ||||||| Sbjct 8395 CCTCTCCGCGAACGA----TTCTCCGCCGTCGATCCACCGCAGGGCCCACTCGGCCTTCT 8340 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGT 48395 || | ||| || | ||||| || || |||| ||| ||||| ||| | | || Sbjct 8339 TCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTT---CTCGGCCGAGT 8283 Query 48396 CCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGA 48455 || | |||||| ||||| |||||| || ||||| | ||||| || || | Sbjct 8282 CCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCGGAGTGGATGTTCTCGATCGCAA 8223 Query 48456 TCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCA 48515 ||||||| || ||||| || | ||||| | ||||| || || | ||| ||| || Sbjct 8222 TCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACCTGGACCTCCTTCATGAACCTCCCCG 8163 Query 48516 GCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGA 48575 ||||||||| || || || || || || || |||||||| || || || | | || Sbjct 8162 CCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGA 8103 Query 48576 AATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTT 48635 | || | ||||| | ||| || | |||| ||||||| | || || || | Sbjct 8102 AGTGCCTCTCGTCATCGGTTAGGTTTTCCCAGTGACGTACGTCGCCGGAGAGATCGACCT 8043 Query 48636 CTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || | |||||||| || || || || |||||||| ||||||| ||||| || Sbjct 8042 CCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCATATCTCCGGGTA 7985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931065217111040