Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq12080 165 2e-35 >seq12080 Length=19512 Score = 165 bits (182), Expect = 2e-35 Identities = 548/854 (64%), Gaps = 18/854 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || ||||||||||||||||||||||| | ||| |||||||||||| ||| | ||| Sbjct 7991 GAGATATGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGAT 8050 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || || ||| | ||| | ||| | ||| || | |||||| ||| || ||| Sbjct 8051 CTCTCCGGCGACGT--ACGTCACTGGGAAAACCTAACCGATGACGAGAGGCACTTCATCA 8108 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || ||||| || || || || ||||||||| | || Sbjct 8109 CTCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTGGAGAATCTGGCGGGGA 8168 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | ||| || ||| |||||| |||||| || |||||||| || | Sbjct 8169 GGTTCATGAAGGAGGTCCAGGTTTCGGAGGCTCGCGCTTTCTATGGCTTCCAGATTGCGA 8228 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| || |||| || || || | ||| || || | ||| Sbjct 8229 TCGAGAACATCCACTCCGAAATGTA---CAGTCTCTTGCTCGAGACCTATATCAAGGACT 8285 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 ||||||| | |||||||| || || ||| | | || || | || ||||| Sbjct 8286 CGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGCGTGGCGAAGAAGG 8345 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||||| || ||||||| || || | | |||| | ||| |||| | | Sbjct 8346 CCGAGTGGGCCCTGCGGTGGATCGACGGCG---GAGAATCGTTCGCGGAGAGGCTCATCG 8402 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 |||| ||| || || ||||| || ||| ||| || |||| | || || ||||| Sbjct 8403 CCTTCGCTTGCGTCGAAGGCATTTTCTTCTCCGGAAGCTTCTGCG-CGATATTTTGGCTA 8461 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || ||| ||||||||| | ||| ||||||||| | ||| | ||||| Sbjct 8462 AAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGATCTCGCGAGACGAA 8521 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||||||||| | ||||| || |||||||||||||| | ||||| | | || | Sbjct 8522 GGTCTCCACTGCGATTTCGCGTGCCTGCTCTACAC---TCTCTTGCGCAAGAAGCTGAGC 8578 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 | ||| ||| | |||| || || || ||||| || |||| ||||||| Sbjct 8579 GAGGAGCGCGTGAAGGCTATCGTCCGCGACGCGGTGGATATAGAGAGGGAGTTTGTGTGC 8638 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | || |||||| | || |||||||| ||||| ||| Sbjct 8639 GACGCGCTGCCCTGCGCGTTGGTTGGGATGAACGGCGATCTGATGAGCCAGTACATCGAG 8698 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAAC 26247 | |||||| || || || || | |||| | || | ||||| | | ||| Sbjct 8699 TTTGTGGCGGATAGGCTTTTGGGCGCGTTGGGGTGTGGCAAAATCTACGATGTTCAGAAC 8758 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 || || || | |||||| || |||||| |||| |||||||| |||||||| ||||| Sbjct 8759 CCATTTGATTGGATGGAACTGATTTCGTTGCAAGGAAAGACCAATTTCTTTGAGAAGAGA 8818 Query 26308 GTCGGCGACTATCA 26321 || || || || || Sbjct 8819 GTTGGGGAGTACCA 8832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928378566352640