Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq5990 583 1e-161 seq40156 536 1e-147 seq6232 174 2e-38 seq9596 161 1e-34 seq4685 107 2e-18 seq5685 93.3 4e-14 seq4833 89.7 5e-13 >seq5990 Length=34798 Score = 583 bits (646), Expect = 1e-161 Identities = 693/937 (74%), Gaps = 2/937 (0%) Strand=Plus/Plus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| ||| || ||| |||| || | || |||| Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATTAT 10113 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 || ||| ||||| ||||||| ||||| || || || || || ||||| ||| ||||||| Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | ||||| || || || || |||||||| || |||| | ||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | ||||| ||||| || |||||||| | ||| ||||||| ||| | ||||| || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || | ||||||||||| ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || ||| || || ||||| |||||||| ||||||||| || ||||| Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 ||||| | ||| ||||||| ||| | | ||||| |||||||||| || ||||| Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 ||||||||||| || || || ||||| ||||||| ||| |||| |||||||||||||| Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| |||||||| || |||||| | ||||| |||||||| |||| ||| || || Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || |||||||||| | || |||||| || | | || ||||| |||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 10653 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| ||| | || |||| ||||||||||| || |||||||| || || || || Sbjct 10654 TGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 10713 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 |||||||| || ||||| || ||||| ||||||||||| ||| ||||||||| | Sbjct 10714 TGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTC 10773 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || ||||||||||| || || |||||||| || || |||||||| || || | || | Sbjct 10774 TTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 10833 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 | || |||||||||||| | ||||| ||||| |||||||| || | | || | || Sbjct 10834 CAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 10893 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 ||| | || | || |||||||| | | |||| || || || ||||||||||| Sbjct 10894 AGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGT 10953 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGAC 9225 ||||| ||| | || || || || ||||| || ||| Sbjct 10954 TATGCATGAACGTAATGCTCATAATTTCCCTCTAGAC 10990 >seq40156 Length=57058 Score = 536 bits (594), Expect = 1e-147 Identities = 720/999 (72%), Gaps = 2/999 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || || || |||||||| |||||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || ||||| || || ||| | || ||| || | || || ||| || ||| | Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTT 5544 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || ||||| || || || |||||| || | | | || ||| | | |||| ||||| Sbjct 5545 AACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 5604 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 ||| || | || |||||||| || ||| || | || || || ||| ||||||| Sbjct 5605 TCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 5664 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || |||||||| || |||| |||| || || |||||||| || ||||| || || | Sbjct 5665 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 5724 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 || || | | |||||||| ||||| ||||| || |||| || |||||||||||||| Sbjct 5725 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGT 5784 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||||| || ||||| || || |||||| |||||||||||||||| ||||| || Sbjct 5785 TTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGG 5844 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 ||||| || || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 5845 TGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 5904 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 || || ||||||||||| ||||| ||| || |||| | || || |||| || || || Sbjct 5905 CCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCA 5964 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | || |||||||| || | | | ||||||| || ||||| || ||| || Sbjct 5965 TGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGC 6024 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 |||| | ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 6025 TTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 6084 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 ||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 6085 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 6144 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 ||| || | ||| | |||| | || ||||| | | || | ||||| || || || Sbjct 6145 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACCTACG 6204 Query 10654 TGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 10713 || || || || || ||||| || ||| | || | ||||||||||||||||||||||| Sbjct 6205 CGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTT 6264 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCA 10773 ||| || || ||||| ||| | || ||||| ||||||| |||||||| | || || Sbjct 6265 CTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCA 6324 Query 10774 ACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 6325 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 6363 >seq6232 Length=104065 Score = 174 bits (192), Expect = 2e-38 Identities = 217/295 (74%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGC-TTCATTAC 8348 || |||||||||||| | |||||||| ||| || ||| | || | || || |||| Sbjct 82852 GGATGGTTTGGCGTTTTGATGATCCCTACC-TTATTGACCGTAACTTCTGTATTTATTAT 82794 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 || ||| ||||||||||||| ||||| || || || || || ||||| ||| ||||||| Sbjct 82793 TGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 82734 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | ||||| || || || || |||||||| || |||| | ||| || || || Sbjct 82733 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 82674 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | ||||| ||||| || |||||||| | ||| ||||||| ||| | ||||| | ||| Sbjct 82673 TTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGATGAATGGTTATACAATGATGG 82614 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGT 8583 |||||| |||| | ||| | |||||| | ||||| || | |||||||||| Sbjct 82613 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 82559 >seq9596 Length=34882 Score = 161 bits (178), Expect = 1e-34 Identities = 197/266 (74%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 10548 TTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTC 10607 |||||||| ||||||||| ||| | |||||||||||| | |||||||| || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 10608 TTTGGACCTCTTCTATTGGAATCATTGGTCTT-GCTCTCAATCTTCGTGCTTACGATTTT 10666 | |||| | || ||||| | | | | ||| ||||| || || || || || || || Sbjct 5419 TATGGATGAGTGCTCTTGGAGT-AGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 10667 GTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAAT 10726 || ||||| || ||| | || | |||||||||||||||||||||||||| || || ||| Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 10727 ATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGC 10786 || ||| | || ||||| ||||||| |||||||| | || || || || |||| | Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 10787 TTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || | ||||| || || ||||| || Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACC 5623 >seq4685 Length=19895 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8688 TGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATAT 8747 |||||||| || ||| |||||||||||||||| || || ||||| ||||||| | Sbjct 6888 TGGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGT 6829 Query 8748 GCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATG 8796 | |||| ||||||| ||||||||||||||| |||||||| || |||||| Sbjct 6828 GATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq5685 Length=160749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 9010 TTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTC 9069 || ||||||||||| || |||||| | || || || ||||| ||||| | || || Sbjct 78504 TTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTTAGGTATC 78563 Query 9070 TCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAA 9129 || |||||||||||| | ||||| ||||| |||||||| ||| | | || | ||| Sbjct 78564 AACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAA 78623 Query 9130 GGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTC 9189 || | || | || |||| || || | |||| || || || |||| |||||| Sbjct 78624 GGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTACGGAAGTT 78683 Query 9190 ATGCACGAAAGAAACGCACACAACTTCCCGCTTGAC 9225 |||| ||| | || || || || ||||| || ||| Sbjct 78684 ATGCGTGAACGTAATGCTCATAATTTCCCTCTAGAC 78719 >seq4833 Length=55696 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 10241 TTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCG 10300 ||| | ||||||| ||| || || ||||||||||||||||| || ||||| | ||| | Sbjct 33048 TTCTTGATCTATC-ACTAGGTCAATCTAGTTGGTTCTTTGCACCTAGTTTTTGTGTCACA 33106 Query 10301 GCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTC 10360 || || || | ||| | ||||| || || | |||||||||||||| | | | || Sbjct 33107 GCTATATTTCAATTCATCCTCTTTTTCTAGTGGTTTCATAATTGGACATTGGACCTATTT 33166 Query 10361 CATATGATGGGAGTTG 10376 ||||||||||||||| Sbjct 33167 TATATGATGGGAGTTG 33182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516220752864000