Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq40156 87.8 3e-12 seq12414 87.8 3e-12 seq6221 87.8 3e-12 >seq40156 Length=57058 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||| Sbjct 1886 TTGGGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTC 1828 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 1827 GAGCCCCGTCAGTCC 1813 >seq12414 Length=24110 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||| Sbjct 19925 TTGGGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTC 19867 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 19866 GAGCCCCGTCAGTCC 19852 >seq6221 Length=81687 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||| Sbjct 10454 TTGGGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTC 10396 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 10395 GAGCCCCGTCAGTCC 10381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777241667617600