Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq4898 89.7 4e-13 seq762 89.7 4e-13 seq6121 84.2 2e-11 seq3733 82.4 6e-11 >seq4898 Length=109433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || || | ||| ||| |||||||| || || ||||| || || ||||||||| Sbjct 54356 GACAAGGAAGGTATCCCCCCAGACCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 54415 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || ||||| ||||| ||||| || || || || ||| |||| || Sbjct 54416 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 54475 Query 28767 AGATTACGAGGAGG 28780 ||| | || ||||| Sbjct 54476 AGACTTCGGGGAGG 54489 >seq762 Length=331234 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || || || || || ||||| ||| || ||| ||| Sbjct 301150 AATGCAGATTTTTGTTAAGACCTTGACTGGGAAGACCATAACCCTGGAGGTTGAAAGTTC 301209 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || ||||| | || ||||| |||||| | || ||||| Sbjct 301210 TGATACAATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGAATTCCTCCAGATC 301268 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| |||||||| | |||||| | || |||| ||||| | Sbjct 301269 AGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACCCTGGCTGATTACA 301328 Query 28732 ACATTCAAAAAGAATCTACTCTGCAC 28757 | || ||||| || |||||||||||| Sbjct 301329 ATATCCAAAAGGAGTCTACTCTGCAC 301354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || || || || || |||||||| || || ||| Sbjct 317592 AATGCAGATTTTTGTTAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGTTC 317651 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || ||||| | || ||||| |||||| | ||| ||| | Sbjct 317652 TGATACAATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGAATTCCCCCAGACC 317710 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| |||||||| | |||||| | ||| |||| ||||| | Sbjct 317711 AGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACA 317770 Query 28732 ACATTCAAAAAGAATCTACTCTGCAC 28757 | || ||||| || |||||||||||| Sbjct 317771 ATATCCAAAAGGAGTCTACTCTGCAC 317796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || || || || |||||||| || || || || Sbjct 300694 AATGCAAATTTTTGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTC 300753 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || ||| ||||||||||| | || || || Sbjct 300754 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 300813 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || || ||||| ||||| || ||||||||| | || | || ||||| || Sbjct 300814 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCTGATTACAA 300873 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| || || || |||||| |||| | |||| || ||||| || Sbjct 300874 CATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGATTGCGTGGAGGAAT 300924 >seq6121 Length=68638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || || | ||| || |||||||| || || ||||| || || ||||||||| Sbjct 2959 GACAAGGAAGGTATCCCCCCGGACCAACAGAGGCTGATTTTTGCTGGTAAGCAATTGGAA 3018 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || ||||| ||||| ||||| || || || || ||| |||| || Sbjct 3019 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTGGTTTTG 3078 Query 28767 AGATTACGAGGAGG 28780 ||| | || ||||| Sbjct 3079 AGACTTCGGGGAGG 3092 >seq3733 Length=159728 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || || |||||| | || ||||| ||||| || |||||||| || || |||||||| Sbjct 111528 GATAAGGAGGGAATCCCTCCGGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAATTGGAG 111469 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| | ||| | || ||||||||||||||||| ||||| ||||| || Sbjct 111468 GATGGGAGGACTCTCGCTGATTATAACATTCAAAAGGAATCCACTCTTCA 111419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425196606359124