Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq5990 522 8e-144 seq6232 163 9e-36 seq4685 98.7 3e-16 >seq5990 Length=34798 Score = 522 bits (578), Expect = 8e-144 Identities = 702/971 (72%), Gaps = 12/971 (1%) Strand=Plus/Minus Query 17826 TTGATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAG 17885 |||| |||||||| ||||| ||||| |||||||||||||| || ||||||||||| | Sbjct 11004 TTGACAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 10945 Query 17886 CCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCT 17942 ||||||||||| | || | | | |||||| ||| | || || ||| | | | Sbjct 10944 CCAAGGTTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCA 10885 Query 17943 GCTACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCC 18002 ||||| ||||||||||| ||||| ||||| | || |||||||||||| ||| || Sbjct 10884 ACTACA---GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCT 10828 Query 18003 ATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTG 18062 | || || | ||| || | || |||||||| || | ||||||||||| | | Sbjct 10827 AAAGCAGTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGA 10768 Query 18063 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 18122 |||||| || |||||||| ||||| || | || ||||| || |||||||| || || Sbjct 10767 GAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACG 10708 Query 18123 ATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCA 18182 |||||||| || ||||| ||||| || ||| | || || | ||| ||| ||| || Sbjct 10707 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCT 10648 Query 18183 GTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCT 18242 || ||||| || || | ||||| || | | || ||||||||| ||||| | Sbjct 10647 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAA 10588 Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 || ||||||| || || ||||| | ||| || || || ||||||||||| ||||| || Sbjct 10587 CCGTCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 10528 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 || |||||||| | |||||| ||||||||||| ||| || ||||||||||| ||||| Sbjct 10527 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAA 10468 Query 18363 AAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGT 18419 || || ||||| |||| ||||| | | ||||| || || || ||| | || ||||| Sbjct 10467 AAGCTTCCTTGACCAATGGGATATATCAAGAAA-AC--AGCAGTTGCATCAGCAACTGGA 10411 Query 18420 GCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGT 18479 || ||||| |||||| |||||| |||||||||||||| | ||||||||||||| | Sbjct 10410 GCTGAATATGCAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCA 10351 Query 18480 CGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCT 18539 | ||||| ||| || | || | | ||||| | ||||| || | ||| || || Sbjct 10350 TGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCG 10291 Query 18540 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 18599 || || |||||||| || || | || |||||||||| |||||||| ||||||| ||| Sbjct 10290 CCATTGTATAACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCT 10231 Query 18600 ATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCT 18659 || || ||| | || | || || || || || || || ||||| || |||| | | Sbjct 10230 ATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGAT 10171 Query 18660 CCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATC 18719 || || ||||| |||||||||||||| || || || ||||||| ||||| || ||||| Sbjct 10170 CCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATA 10111 Query 18720 AAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACG 18779 | |||| | | || |||||| || | | ||||||||| | || |||||||| || | | Sbjct 10110 ATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATG 10051 Query 18780 TAGAGGCGGTT 18790 || || |||| Sbjct 10050 TAAAGATGGTT 10040 >seq6232 Length=104065 Score = 163 bits (180), Expect = 9e-36 Identities = 221/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| || | ||| || || | || |||||||| || || | || || Sbjct 82587 AAGTGTAGAACAATTAGCTCATAAGGACCATCATTGTATAACCATTCATCAACGGAACCA 82646 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||| |||||||| ||||| | ||| || || ||| | || | || || || Sbjct 82647 GCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCA 82706 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || || ||||| || |||| | ||| || ||||| |||||||||||||| || Sbjct 82707 GAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATA 82766 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || || ||||||||||||| || ||||| | |||| | | || | |||| || | | | Sbjct 82767 TCCACCGGAGGAGCAGCAATGAAAGCAATAATAAATACAGAAGTTACGGTCAATAAGGTA 82826 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809 |||||||| | || |||||||| || | ||| || ||||| | || || || | | || Sbjct 82827 GGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCTAG 82886 Query 18810 TCACATAA 18817 | ||| || Sbjct 82887 TTACAGAA 82894 >seq4685 Length=19895 Score = 98.7 bits (108), Expect = 3e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 18269 CATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAA 18328 ||| || || || ||||||||||| ||||| || | |||||||| | || ||| ||||| Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 18329 AGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 |||||| ||| |||||||||||||||| ||| ||||| |||| ||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACCA 6888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151246243442664