Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq40156 549 2e-151 seq5990 499 4e-136 seq9596 161 1e-34 seq6232 136 5e-27 seq5685 123 3e-23 seq4408 107 2e-18 seq998 84.2 3e-11 >seq40156 Length=57058 Score = 549 bits (608), Expect = 2e-151 Identities = 734/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 6378 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 6319 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||||| || || || || || |||||||||||| Sbjct 6318 TGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTGTAGAACGTC 6259 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || || || || |||||||| || || ||| Sbjct 6258 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCGCGTAGG 6199 Query 101890 TTGAGAGC-AAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAA 101948 || ||||| ||| | | || | || | | ||| |||| | ||| | || || ||||| Sbjct 6198 TTCAGAGCCAAGCCGACTACT-CCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAA 6140 Query 101949 GAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCA 102008 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 6139 TAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCA 6080 Query 102009 GAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTT 102068 || ||||| || || |||||||||||||| |||||| |||| || | | || || Sbjct 6079 AAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAAAAGCACG 6020 Query 102069 GAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGAT 102128 ||| || ||||| ||||||||||||| | | ||| || || || || |||| || || Sbjct 6019 GAATGTATTTGCGCCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAAT 5960 Query 102129 TGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAG 102188 || | || || || | |||| | ||| ||||| ||||||||||| |||||||| | Sbjct 5959 AGCGCATAGAAGGGCAGCGCCCAATACACCCGCAACCCCCATCATATGAAATGGGTTCAA 5900 Query 102189 CGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 ||||| ||||| || || || | ||||| | ||||| |||||| ||||| |||||||| Sbjct 5899 TGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCGACACCAAA 5840 Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAA 102308 ||||||||||||||||| ||||| || || ||||| || || || ||| ||||| Sbjct 5839 ACTGGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAGGAATACAGAAACAAA 5780 Query 102309 AACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGC 102368 |||||| || || ||||||| || || ||||| || || || | | || | | ||| Sbjct 5779 AACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGC 5720 Query 102369 CAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAA 102428 | || |||||||| | ||||||||| || || | || || ||||||||||| ||||| Sbjct 5719 AAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAA 5660 Query 102429 AGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 || ||| || || || | ||| ||| | ||||||||||| ||||| |||||||| Sbjct 5659 AGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCTGGACCCCA 5600 Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548 |||| | | ||| || | | | | |||||| || || || || || || | ||| Sbjct 5599 TAGTAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACTGCCGCGGTTAAGAA 5540 Query 102549 ATTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACG 102607 || ||| ||||| | || | ||| | || || |||||||| ||||| |||| | Sbjct 5539 GTT-GCAGCCTTCCAAATAGGAACTCGCCAATCCATGTGTATACCATGAAGTTACAAAGG 5481 Query 102608 TCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAG 102667 | || || |||| ||| || || | |||| ||||||| ||||| || | ||| || | Sbjct 5480 TTGTACCTGTAAACCAACCTCCTAACGCGAAATAAGCACAAGGAAAGAGCAATAGACCGG 5421 Query 102668 ACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||||| ||||| || || || || | | ||||||||||| || ||||| Sbjct 5420 ACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 5366 >seq5990 Length=34798 Score = 499 bits (552), Expect = 4e-136 Identities = 688/965 (71%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||| ||| | ||| || ||||| || ||||| ||||| || ||||| ||||||||||| | Sbjct 11000 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 10941 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| || || | || | |||||||| || | ||| |||| |||| ||||| | Sbjct 10940 GGTTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTA 10881 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||| ||||| || || | |||||| ||||| ||||| | ||| | || | Sbjct 10880 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 10821 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 ||||||||||||| ||||| || | || |||| Sbjct 10820 TGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGT 10761 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 |||| || |||||||| ||||| || || || ||||||||||| |||||||| || | Sbjct 10760 TGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 10701 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||||||||| ||||| ||||||| | ||| ||||||| |||| || || | Sbjct 10700 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTT 10641 Query 103530 CAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588 | | || | | | || | || ||||| |||| |||||||||||||| || ||||| || Sbjct 10640 CCCTGATCAAACTAGAAGTTACCAAGC-AACCATGCATAGCACTGAATAGGGAACCGTCG 10582 Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGG 103648 || || ||||| || || | |||||| || |||||||| || ||||| || || || ||| Sbjct 10581 AATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 10522 Query 103649 AAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAA 103708 || || | |||| ||||||| || || ||||| || | ||||||| | || || || Sbjct 10521 AATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTT 10462 Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||||| ||| || | |||||| || || | ||| | ||||| ||||| || ||| Sbjct 10461 CCTTGACCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATAT 10402 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| ||||| |||||||| || |||||| | | |||||||||| | |||||| Sbjct 10401 GCAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATA 10342 Query 103829 TATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATAC 103888 || | | |||| | |||||| | || | || | ||||||| || || || Sbjct 10341 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTAT 10282 Query 103889 AGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTG 103948 | ||| ||||||| || | |||||||| || || || ||||||| ||| || || || Sbjct 10281 AACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGC--TG 10224 Query 103949 GAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006 || || |||| || |||||||| || || || || ||||| | || || |||| | Sbjct 10223 CAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAA 10164 Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065 | ||||||||||| || || ||||| || ||||| | || | |||||||| || || Sbjct 10163 CAGGTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATA 10104 Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125 |||| ||||| | ||| | || |||||||||| ||||| ||||| |||| || ||| Sbjct 10103 CAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 10045 Query 104126 CGGTT 104130 |||| Sbjct 10044 TGGTT 10040 >seq9596 Length=34882 Score = 161 bits (178), Expect = 1e-34 Identities = 206/281 (73%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||| ||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 5638 AGAGTGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 5579 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||||| || || || || || |||||||||||| Sbjct 5578 TGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTGTAGAACGTC 5519 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || || || || |||||||| || || ||| Sbjct 5518 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCGCGTAGG 5459 Query 101890 TTGAGAG-CAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAA 101948 || |||| |||| | | || | || | | ||| |||| | ||| | || || ||||| Sbjct 5458 TTCAGAGCCAAGTCGACTACT-CCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAA 5400 Query 101949 GAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAA 101989 | |||||||||||| ||||| | ||||| ||| |||| Sbjct 5399 TAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAA 5359 >seq6232 Length=104065 Score = 136 bits (150), Expect = 5e-27 Identities = 190/262 (73%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 103872 AAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGT 103931 |||||||| | || || | ||| ||||||| || | |||||||| || || || |||| Sbjct 82609 AAGGACCATCATTGTATAACCATTCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGT 82668 Query 103932 GAAGACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTA 103989 | | ||| || || || || || |||| || |||||||| || || || || ||||| Sbjct 82669 GCAAACCTATAGC--TGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTA 82726 Query 103990 CATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTAC 104049 | || || |||| || ||||||||||| || || ||||| || ||||| || || | Sbjct 82727 AAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCCACCGGAGGAGCAGCAAT 82786 Query 104050 GAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGA 104108 |||||||| || || |||| ||| | | ||| | || |||||||||| || || | Sbjct 82787 GAAAGCAATAATAAATACAGA-AGTTACGGTCAATAAGGTAGGGATCATCAAAACGCCAA 82845 Query 104109 ACCAACCAACATAGAGACGGTT 104130 |||| |||| || |||||||| Sbjct 82846 ACCATCCAATGTAAAGACGGTT 82867 >seq5685 Length=160749 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||| ||| | ||| || ||||| || ||||| ||||| || |||| |||||| |||| | Sbjct 78729 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAA 78670 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| || || | || || || |||| || | |||| ||| |||| ||||| | Sbjct 78669 GGTTAGCACGATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACTA 78610 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 ||| |||||||| ||||| || || | |||||| ||||| ||| | | ||| | |||| Sbjct 78609 CGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGG 78550 Query 103350 TGAACCAGATACCCACTA 103367 ||||||| ||||| |||| Sbjct 78549 TGAACCAAATACCTACTA 78532 >seq4408 Length=147402 Score = 107 bits (118), Expect = 2e-18 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 102811 CACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGT 102869 |||| || | ||||||||| || || || ||||| ||||||||| | | | ||||| | Sbjct 127938 CACAGTCTGCAGTTGGGTACGCGACACAAGTCAGCACAAAACCTTCCTTCATTTGATTTT 127879 Query 102870 CATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAG 102929 |||| || || || ||| ||| ||||| | || | | ||||| |||||||| | Sbjct 127878 CATCAAGGAATGAACCATCAGATTGGTCTACTGAGCCTGTCACCATCTTCCCAGCACAGG 127819 Query 102930 TAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGT 102989 |||| || || ||||| | || ||||||||||| ||||| ||||| | ||||| | | Sbjct 127818 TAGAGCAAGCCCCAGCCCTGCATGAATAAGGCAGCTCAACTCCTGCATTCTCAGCTGAAT 127759 Query 102990 CTAGAATATATTGATCATC 103008 |||| || || |||||| Sbjct 127758 CTAGGATGTAAGCATCATC 127740 >seq998 Length=246676 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/201 (70%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 102811 CACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATC 102867 |||| || |||| ||||||| || || ||||| ||| |||| ||||| | || | Sbjct 28464 CACAGTCTGAAGACGGGTATGAGACACAAGTCAGCACATAACC--CTTCTCCATCTGCTT 28407 Query 102868 GTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACA 102927 |||||||||||| ||| |||| |||||| || | || || | | || |||||||| Sbjct 28406 GTCATCCAGAAATGATCCATCTGATTGATCCACTGATCCTGAAACCAACTGCCCAGCACA 28347 Query 102928 AGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGC 102987 ||||| || || ||||| | || || ||||||| || | || || | ||||| | Sbjct 28346 GGTAGAGCAGGCCCCAGCCCTGCACGAGTAAGGCAACTCCAGTCCAGCATTTTCAGCTGA 28287 Query 102988 GTCTAGAATATATTGATCATC 103008 ||| || || || |||||| Sbjct 28286 GTCAAGGATGTAAGCATCATC 28266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633195607848480