Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq5990 495 1e-135 seq5685 118 3e-22 seq6232 104 7e-18 >seq5990 Length=34798 Score = 495 bits (548), Expect = 1e-135 Identities = 689/963 (72%), Gaps = 2/963 (0%) Strand=Plus/Minus Query 21465 ACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCA 21524 || || || | ||| || ||||| || || || || || |||||||| || || | ||| Sbjct 11001 ACAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCA 10942 Query 21525 AGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGC 21584 ||||| ||||| |||| ||| | ||||||||| || || || || || | | | | | Sbjct 10941 AGGTTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACT 10882 Query 21585 AGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCA 21644 | ||||||||| || ||||||||||| |||||||||||||| || | || | ||| Sbjct 10881 ACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCA 10822 Query 21645 GCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTA 21704 | ||||| |||||||| |||||||| || || || |||||||| | | ||| ||||| Sbjct 10821 GTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTG 10762 Query 21705 TTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTG 21764 || || |||||||||||||| || | || |||||||| || |||||||| || ||||| Sbjct 10761 TTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 10702 Query 21765 TAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTC 21824 ||||| |||||||||||||| || ||||||| | ||| || | | ||| || || Sbjct 10701 TAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTT 10642 Query 21825 TCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCA 21884 || | || | || || |||| || ||| ||||||||| ||| | || | Sbjct 10641 TCCCTGATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCG 10582 Query 21885 AATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGG 21944 ||||| || || ||||| | ||||||||| || |||||||| || ||||||||||||||| Sbjct 10581 AATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 10522 Query 21945 AACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAG 22004 || || | |||| ||||||| || || || || || | |||||| | |||||||| Sbjct 10521 AATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTT 10462 Query 22005 CCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTAC 22064 || || |||| ||||| | | ||| |||||||| ||| | || || ||||| || || Sbjct 10461 CCTTGACCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATAT 10402 Query 22065 GCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATG 22124 |||||| ||||| || | ||| ||||| || | |||||||||||||| | ||||| Sbjct 10401 GCAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATA 10342 Query 22125 TAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTAC 22184 ||| | || |||| | |||||| | || | || | | |||||||| ||||| Sbjct 10341 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTAT 10282 Query 22185 AGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTA 22244 | ||||||||||| | | |||||||||| |||||||| ||||| | || || || | Sbjct 10281 AACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCA 10222 Query 22245 CTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACG 22304 | |||| | ||| || || || || || || || || | || || |||| || Sbjct 10221 GAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACA 10162 Query 22305 GGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAA 22364 ||||| || || ||||| || || || || || | ||| || || |||||||| | Sbjct 10161 GGTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACA 10102 Query 22365 GTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACG 22423 | || |||| ||| ||| | || ||||| | || || |||||||| | |||||| | Sbjct 10101 GAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGATG 10043 Query 22424 GTT 22426 ||| Sbjct 10042 GTT 10040 >seq5685 Length=160749 Score = 118 bits (130), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || | ||| || ||||| || || || || || ||| |||| || || Sbjct 78733 TCGACAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTA 78674 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 |||||||| ||||| |||| ||| ||| || |||| || || || || | | | | Sbjct 78673 CCAAGGTTAGCACGATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCA 78614 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAA 21639 | | |||||||| || ||||||||||| |||||||||||||| || || || || Sbjct 78613 ACTACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAA 78554 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 ||| | |||||||||||||| | |||||| || ||| |||||||| | | ||| | Sbjct 78553 GCGGTG--AACCAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATGTAAAGAACGAG 78496 Query 21700 AAT 21702 ||| Sbjct 78495 AAT 78493 >seq6232 Length=104065 Score = 104 bits (114), Expect = 7e-18 Identities = 183/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 ||||| | ||||| | ||||||||||| | | |||||||||| |||||||| ||||| Sbjct 82611 GGACCATCATTGTATAACCATTCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGTGC 82670 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | || || || | | |||| | ||| || || || || || || || || | Sbjct 82671 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGT 82730 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 || || |||| || ||||| || || ||||| || || || || || || ||| || Sbjct 82731 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCCACCGGAGGAGCAGCAATGAAA 82790 Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 || |||||||| || || ||| ||| ||| | || ||||| | || || ||||| Sbjct 82791 GCAATAATAAATACAGAAGTTACGGTCAATAAGGTA-GGGATCATCAAAACGCCAAACCA 82849 Query 22409 TCCTACATAAAGACGGTTATTAGT 22432 ||| | ||||||||||| | ||| Sbjct 82850 TCCAATGTAAAGACGGTTTTCAGT 82873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146138280349680