Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5990 535 6e-147 seq40156 513 2e-140 seq6232 149 8e-31 seq9596 116 5e-21 seq4685 105 9e-18 seq4408 96.9 5e-15 seq5685 91.5 2e-13 seq388 84.2 3e-11 >seq5990 Length=34798 Score = 535 bits (592), Expect = 6e-147 Identities = 687/945 (73%), Gaps = 2/945 (0%) Strand=Plus/Minus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || |||||||| || || | ||| || || || || | ||||| |||||| || | | Sbjct 10983 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 10924 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | | ||||| || || | ||| |||| || ||||| ||||| || ||||| ||| Sbjct 10923 ATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACAGATTGGTTGAAATTG 10864 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 ||||| || | ||||||||||| ||| | ||| | || ||||||||||| || || Sbjct 10863 AAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 10804 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||| || || |||||||| || || ||||| || |||||||| |||||||||| Sbjct 10803 ACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 10744 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 || ||||| || || || || ||||| || || ||||| || || || ||||| |||||| Sbjct 10743 AAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 10684 Query 27046 CCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGAT 27105 ||||| | ||||| | ||| || ||| |||| || || || | || | ||| Sbjct 10683 CCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 10624 Query 27106 GTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCG 27165 || |||| | || ||||||||| ||| || || || ||||||| ||||| ||||| Sbjct 10623 GTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGAATACACCAGCTACACCT 10564 Query 27166 AGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTA 27225 | |||||| || |||||||||||||| ||||| || ||||||||||||| |||| |||| Sbjct 10563 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 10504 Query 27226 AAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAG 27285 ||||||||||| || || ||||||||| | || || || |||||||| | ||||| Sbjct 10503 AAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATGGGATAT 10444 Query 27286 ACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGA 27345 | | ||| || ||| | ||| |||| |||||||| |||||||| ||| ||||| || Sbjct 10443 ATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATATGCAACAGCAATCCAAGGG 10384 Query 27346 CGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATA 27405 |||||||||| ||| | |||||||||||| | ||||||||| | | || | Sbjct 10383 CGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGT 10324 Query 27406 AGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGAT 27465 | |||||| | || | || | ||||||| || || || ||||| ||||| | || Sbjct 10323 AAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAACCATTCATCAACGGAA 10264 Query 27466 GCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCA 27525 | |||||||| |||||||| ||||| | ||| || || ||| | || | || ||| Sbjct 10263 ACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 10204 Query 27526 CCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCA 27585 |||||||| || || || || || | || || |||| ||| |||||||||||||| ||| Sbjct 10203 CCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 10144 Query 27586 ATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAG 27644 ||||| || || || | || ||||| || | ||| || |||| |||||| | || | Sbjct 10143 ATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGTCAATAA 10085 Query 27645 TGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTT 27689 || |||||||||| ||||| ||||| |||| || | | |||| Sbjct 10084 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGATGGTT 10040 >seq40156 Length=57058 Score = 513 bits (568), Expect = 2e-140 Identities = 731/1021 (72%), Gaps = 6/1021 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 6383 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 6324 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | ||| | || || | ||||||||| ||||||| Sbjct 6323 GATCTTGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAGAATATTTTTGGTGTAGA 6264 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || ||||| || || ||| || || ||||| || | Sbjct 6263 ACGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCGC 6204 Query 23566 GAAGATTAAGAGC-AAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGA 23624 | || || ||||| ||||| | | | |||| || | | ||| | ||| | || || Sbjct 6203 GTAGGTTCAGAGCCAAGCCGACTACT-CCAAGAGCACTCATCCATAAACCGGTTACTGGT 6145 Query 23625 ACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGT 23684 ||||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| Sbjct 6144 ACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGG 6085 Query 23685 GACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAAC 23744 |||||||| || || || || ||||| ||||| || || ||| | ||||| | | || Sbjct 6084 GACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAAAA 6025 Query 23745 GCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCA 23804 || || || ||||| || ||||||||| | | ||||| || || ||| | ||| Sbjct 6024 GCACGGAATGTATTTGCGCCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCA 5965 Query 23805 TGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGG 23864 |||||||| | ||||| || | |||| || ||| ||||| ||||||||||| || ||| Sbjct 5964 TGAATAGCGCATAGAAGGGCAGCGCCCAATACACCCGCAACCCCCATCATATGAAATGGG 5905 Query 23865 TTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACA 23924 || | ||||| |||||||| || |||| ||||| | ||| | || || || || ||| Sbjct 5904 TTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCGACA 5845 Query 23925 CCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGAC 23984 || ||||| ||||||||||||||| ||||| || | ||||| || ||||||||||| Sbjct 5844 CCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAGGAATACAGAA 5785 Query 23985 ACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA 24044 || || |||||||| ||| |||| || || || ||||| || || || | | || ||| Sbjct 5784 ACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGA 5726 Query 24045 -CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGC 24103 || || |||||||| ||||||||||| |||||||| ||| | || || ||||||||||| Sbjct 5725 TCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCGCCGTGGAGAGC 5666 Query 24104 AACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGG 24163 |||||| | ||| || || || | ||| ||| || ||| || ||||| | || || Sbjct 5665 AACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCTGG 5606 Query 24164 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGT 24223 |||||| |||| | | ||| || | | | | |||||| || || || || || || Sbjct 5605 ACCCCATAGTAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACTGCCGCGGT 5546 Query 24224 AAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAA 24282 | ||||| ||| || || | ||||||||| || | |||||| || ||||| || | Sbjct 5545 TAAGAAGTT-GCAGCCTTCCAAATAGGAACTCGCCAATCCATGTGTATACCATGAAGTTA 5487 Query 24283 CAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGA 24342 |||| | ||| || |||| |||||| || | || | ||||||| |||| || | | Sbjct 5486 CAAAGGTTGTACCTGTAAACCAACCTCCTAACGCGAAATAAGCACAAGGAAAGAGCAATA 5427 Query 24343 GTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAA 24402 | || |||||||| ||||| || || || |||| | |||||| |||| || |||| Sbjct 5426 GACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAA 5367 Query 24403 A 24403 | Sbjct 5366 A 5366 >seq6232 Length=104065 Score = 149 bits (164), Expect = 8e-31 Identities = 194/266 (73%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 |||||||| | || || ||||| ||||| | || | |||||||| |||||||| |||| Sbjct 82609 AAGGACCATCATTGTATAACCATTCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGT 82668 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACA 27550 | | ||| || || ||| | || | || ||||||||||| || || || || || | Sbjct 82669 GCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAA 82728 Query 27551 TAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGA 27610 || || |||| ||| |||||||||||||| |||||||| || || || || || |||| Sbjct 82729 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCCACCGGAGGAGCAGCAATGA 82788 Query 27611 ATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAAC 27669 | || | ||| || |||| |||| | | || | || |||||||||| || || ||| Sbjct 82789 AAGCAATAATAAATACAGA-AGTTACGGTCAATAAGGTAGGGATCATCAAAACGCCAAAC 82847 Query 27670 CAACCAACATACAAACGGTTGTTAGT 27695 || |||| || | |||||| | ||| Sbjct 82848 CATCCAATGTAAAGACGGTTTTCAGT 82873 >seq9596 Length=34882 Score = 116 bits (128), Expect = 5e-21 Identities = 175/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAA 23488 || |||||| || || || || || | |||||| |||| | ||| | || || | Sbjct 5600 AAGGTTTTCATGAGGCTGATCTTGAGCCGCCATCCAAGCACGAATGCCTTCATTTAAAAG 5541 Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACT 23548 ||||||||| |||||||| |||||| | | |||||| || ||||| || || ||| Sbjct 5540 AATATTTTTGGTGTAGAACGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGA 5481 Query 23549 CACAAAATCATAAGCACGAAGATTAAGAGC-AAGCCCAATGATGCCAATAGAAGAGACCC 23607 || || ||||| || || || || ||||| ||| | | | | |||| || | | || Sbjct 5480 AACGAAGTCATAGGCGCGTAGGTTCAGAGCCAAGTCGACTACT-CCAAGAGCACTCATCC 5422 Query 23608 AAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACG 23667 | | ||| | || || ||||| ||||||||||| || |||||||| |||||| ||| | Sbjct 5421 ATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAG 5362 Query 23668 CAACCC 23673 |||||| Sbjct 5361 CAACCC 5356 >seq4685 Length=19895 Score = 105 bits (116), Expect = 9e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 27168 CATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAA 27227 |||||| || |||||||||||||| ||||| || |||||||||||| || | |||| || Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 27228 AGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACC 27275 ||||||||| || |||||||||||| ||| || ||| ||||||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACC 6887 >seq4408 Length=147402 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 32653 AGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAA 32712 |||||| || || |||||||| |||||||| ||||| | ||||||| ||||| | ||| Sbjct 127928 AGTTGGGTACGCGACACAAGTCAGCACAAAACCTTCCTTCATTTGATTTTCATCAAGGAA 127869 Query 32713 CGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGC 32772 || |||| ||||||||||| || | || ||||| || ||||| | || || || Sbjct 127868 TGAACCATCAGATTGGTCTACTGAGCCTGTCACCATCTTCCCAGCACAGGTAGAGCAAGC 127809 Query 32773 ACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 || || | || || || | ||||| || | | ||| |||| ||| |||||||| Sbjct 127808 CCCAGCCCTGCATGAATAAGGCAGCTCAACTCCTGCATTCTCAGCTGAATCTAGGATGTA 127749 Query 32833 TTGATCATCAG 32843 |||||||| Sbjct 127748 AGCATCATCAG 127738 >seq5685 Length=160749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || |||||||| || || | ||| | || || || ||||| |||||| || | | Sbjct 78712 GGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAAGGTTAGCACGATTAATA 78653 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | || || | || || | |||| ||| || ||||| || || || ||||| ||| Sbjct 78652 ATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACTACGGATTGGTTGAAATTG 78593 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 ||||| || | ||||||||||| ||| | ||| | ||||||||||| || || || Sbjct 78592 AAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTGAACCAAATACCTACT 78533 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGA 26963 | ||||| || ||||||||| || || ||||| || Sbjct 78532 ATAGGCCAAGCCATAAGGAAGAAATGTAAAGAACGAGA 78495 >seq388 Length=54843 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23749 TAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAA 23808 |||| || ||||| | || |||||||| | |||||||| ||||| | |||||| Sbjct 28224 TAAATGTATTTGCATTATCATCATCTTCAACTAAAGTATTCTCTACAGTTGCACCATGAG 28283 Query 23809 TAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGG 23864 ||||| | ||||| || | |||| || ||| ||||||||||||||||| || ||| Sbjct 28284 TAGCACATAGAAGAGCAACACCCAATACACCGGCAACTCCCATCATATGAAATGGG 28339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665160355085920