Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4895 91.5 2e-13 >seq4895 Length=78305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 240/365 (66%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||| || || ||| || || || |||||| | ||| ||||| Sbjct 72269 CCTGGAACTGGGAAGACTCTGCTAGCCAAGGCAATTGCTGGTGAAGCTGGTGTTCCATTT 72328 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | ||||| ||||||||||| ||||| |||||| | || Sbjct 72329 TTCTCTATCTCAGGTTCAGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCTCGAGTC 72388 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | || || ||| || || ||||| || ||||||| ||| Sbjct 72389 CGTGATCTTTTCAAGAAGGCAAAGGAGAATGCTCCTTGCATTGTATTTGTTGATGAAATT 72448 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || |||| | | |||| |||| || ||||| || |||||| Sbjct 72449 GATGCCGTTGGACGGCAAAGAGGAACTGGAATTGGT---GGAGGGAATGATGAAAGAGAA 72505 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 || || |||| || || | || || |||||||| ||||| | | |||||||| | Sbjct 72506 CAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAAGGTAACACTGGCATCATT 72565 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| || || || | | || || || || ||| | || | || || ||| Sbjct 72566 GTGATTGCAGCAACCAACAGGGCTGACATTCTGGACTCTGCCTTACTGAGGCCTGGACGT 72625 Query 175672 TTTGA 175676 ||||| Sbjct 72626 TTTGA 72630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596270151889280