Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq5990 499 4e-136 seq6232 134 2e-26 seq5685 100 4e-16 seq4685 89.7 6e-13 >seq5990 Length=34798 Score = 499 bits (552), Expect = 4e-136 Identities = 688/957 (72%), Gaps = 4/957 (0%) Strand=Plus/Minus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| |||||||||| ||||| || || ||||| | ||||||||||||||||||||| | Sbjct 11000 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 10941 Query 7946 AGTTTGCTCTGTTTAATACG-TCACCCCATGTAGGAATGATTTTACCATTAACATCAACA 8004 ||| || | | |||||| | | |||| ||| ||| | | ||| | | |||||| Sbjct 10940 GGTTAGCAC-GATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACT 10882 Query 8005 ACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAA 8064 || |||||||| || || || || || | ||| || ||||| |||| ||||| | || | Sbjct 10881 ACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCA 10822 Query 8065 GTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTG 8124 || ||||| | || ||| || || | | || |||||||| || | | | | ||| Sbjct 10821 GTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTG 10762 Query 8125 TT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATT 8183 || |||| | ||||| ||||| || |||| ||||| || ||||||||||| || ||||| Sbjct 10761 TTGAAACTA-GCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATT 10703 Query 8184 ATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGT 8243 ||| || ||||| |||||||| || | ||||| | ||| ||| || | ||| || || Sbjct 10702 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGT 10643 Query 8244 CTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACC 8303 || ||||| | | ||| || || || |||| |||||||||||||| || || || | Sbjct 10642 TTCCCTGATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTC 10583 Query 8304 GAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTG 8363 ||| | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || || Sbjct 10582 GAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 10523 Query 8364 GAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGA 8423 |||||| | ||||||||| || ||||||||||| ||||||||||| || ||||| || Sbjct 10522 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCT 10463 Query 8424 ACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATA 8483 || ||||||| ||||||| ||||| || || ||| ||| |||||||| ||| Sbjct 10462 TCCTTGACCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATA 10403 Query 8484 TGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCAT 8543 ||| ||| ||||| || | |||||||| ||| | | ||||||| |||||| Sbjct 10402 TGCAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCAT 10343 Query 8544 GTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATA 8603 ||| || | |||| | |||||| | | || | || ||| ||||| || || || Sbjct 10342 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTA 10283 Query 8604 CAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTT 8663 ||||| ||||| | | |||||||||| || || || ||||| || || ||||| Sbjct 10282 TAACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGC 10223 Query 8664 GGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAAC 8723 |||| |||| | |||||||| || || || ||||| || | | || || | ||| Sbjct 10222 AGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAAC 10163 Query 8724 AGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCA 8783 ||||||||||||||| || ||||| || || |||| |||||| || || | ||||| Sbjct 10162 AGGTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATAC 10103 Query 8784 AGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 || || || | || ||| ||| ||||| | ||| |||||||| || | ||||| Sbjct 10102 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 10046 >seq6232 Length=104065 Score = 134 bits (148), Expect = 2e-26 Identities = 215/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 8538 ACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597 |||||| ||| || | |||| | |||||| | | || | || ||| ||||| | Sbjct 82559 ACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCATC 82618 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || || ||||| ||||| | | |||||||||| || || || ||||| || || || Sbjct 82619 ATTGTATAACCATTCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGTGCAAACCTAT 82678 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 ||| |||| |||| | |||||||| || || || ||||| || | | || || Sbjct 82679 AGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCC 82738 Query 8718 TGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGAT 8777 | |||||||||||||||||| || ||||| || || ||||||||||| || || | || Sbjct 82739 AGAAACAGGTTCACGAATACCATCAATATCCACCGGAGGAGCAGCAATGAAAGCAATAAT 82798 Query 8778 AAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATA 8837 ||| || || | | || ||| ||| ||||| | ||| |||||||| || | || Sbjct 82799 AAATACAGAAGTTACGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTA 82858 Query 8838 AAGTCTGTT 8846 ||| | ||| Sbjct 82859 AAGACGGTT 82867 >seq5685 Length=160749 Score = 100 bits (110), Expect = 4e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| |||||||||| ||||| || || ||||| | |||| ||||||||||| |||| | Sbjct 78729 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAA 78670 Query 7946 AGTTTGCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACA 8004 ||| || | | ||||| | ||| || | ||| ||| | ||| | | |||||| Sbjct 78669 GGTTAGCAC-GATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACT 78611 Query 8005 ACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAA 8064 || |||||||| || || || || || | ||| || ||||| ||| ||||| | || Sbjct 78610 ACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCG 78551 Query 8065 GTTAACCAAACACATAC 8081 || ||||||| || ||| Sbjct 78550 GTGAACCAAATACCTAC 78534 >seq4685 Length=19895 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 8325 CATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAA 8384 ||| || || || |||||||| ||||| ||||| | |||||||| | || |||||| || Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 8385 CGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATA 8443 ||||||||||| || |||||||| |||| ||| || | |||||| | |||||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACCAGTTAGATATA 6898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615553267868320