Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq5990 580 1e-160 seq40156 527 7e-145 seq9596 152 6e-32 seq5685 149 7e-31 seq5932 95.1 1e-14 seq2527 91.5 2e-13 seq87 91.5 2e-13 seq388 87.8 2e-12 seq10558 84.2 2e-11 >seq5990 Length=34798 Score = 580 bits (642), Expect = 1e-160 Identities = 729/998 (73%), Gaps = 2/998 (0%) Strand=Plus/Plus Query 165760 TGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTT 165819 |||| | |||||| ||||| | ||||||| | |||| ||| || | || |||||| Sbjct 10004 TGGGGTTACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTT 10063 Query 165820 GGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 165878 ||| ||||||| || || | ||| | |||||| |||| || || | || ||||| Sbjct 10064 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCAT 10122 Query 165879 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTA 165938 ||| |||| || ||||| || || || || |||||||| || |||| ||||| | || Sbjct 10123 TGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 10182 Query 165939 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTT 165998 || || || || || |||||||| || |||| |||| || || ||| | ||||| Sbjct 10183 CGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACTT 10242 Query 165999 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCA 166058 || || || |||||||| | || |||| |||||| | || || || ||||||| | Sbjct 10243 TTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATAA 10302 Query 166059 ACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 166118 || |||| | |||||| | |||| | | || ||||||| |||||||||||| Sbjct 10303 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAACT 10362 Query 166119 GTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGC 166178 || ||||||||||||||| || ||||| |||||| || ||||| ||||| |||| Sbjct 10363 TAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGA 10422 Query 166179 TGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCC 166238 ||| | ||| || ||| | ||||||| | |||||||| || || ||||| | ||||| Sbjct 10423 TGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGCC 10482 Query 166239 ACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCT 166298 || ||||| || || || ||||||| |||| | || ||||| ||||||||||| || || Sbjct 10483 TCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 10542 Query 166299 CATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGC 166358 ||||| || || || ||| | || || ||||| ||||| | || | || ||||| Sbjct 10543 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTGC 10602 Query 166359 TATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCA 166418 |||||| || | ||||| |||||| | | | || || || || |||| ||||| Sbjct 10603 TATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 10662 Query 166419 AAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGG 166478 ||| | ||||||| ||||| ||||| |||||||| || || |||||||| |||||||| Sbjct 10663 TAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGG 10722 Query 166479 TTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTT 166538 ||| || || || ||||| |||||||| ||| |||||||| || || || || || || Sbjct 10723 TTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTT 10782 Query 166539 CTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGAT 166598 |||||| || || |||||||| || || ||||||||||| || | || || ||| || Sbjct 10783 CTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAT 10842 Query 166599 GGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 166658 ||| |||||| | || |||||||| |||||||| || | ||||| |||| |||| ||| Sbjct 10843 GGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGT 10902 Query 166659 GTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGA 166718 | || |||||||| || || |||| || ||| || |||||||||||||||||||| Sbjct 10903 AATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGA 10962 Query 166719 GCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTG 166756 ||||| || || || ||||| || ||| | ||| ||| Sbjct 10963 ACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 527 bits (584), Expect = 7e-145 Identities = 734/1022 (72%), Gaps = 10/1022 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| ||||| |||||||| || ||||| || Sbjct 5366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5425 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||||||| | || | || |||||| |||| || || || || Sbjct 5426 CTATTGCTCTTTCCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTT 5485 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGG-TGCGAACTT 167189 || || |||||||| |||||| | ||| |||| || | || || ||| ||||| Sbjct 5486 GTAACTTCATGGTATACACATGGATTGGCG---AGTTCCTATTTGGAAGGCTGC-AACTT 5541 Query 167190 TCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249 | || ||||||||| |||||| || || | | | || ||||| | | ||||| Sbjct 5542 CTTAACCGCGGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATG 5601 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 |||||| ||| | ||||| ||||| | ||| ||| | || || || ||| |||| Sbjct 5602 GGGTCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTT 5661 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369 ||| || |||||||| || || | || || ||||||||| | || || ||||||||||| Sbjct 5662 TGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGC 5721 Query 167370 TCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCT 167428 ||| ||| | | | || || || ||||| || || ||||||| ||| |||||||| | Sbjct 5722 TCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTT 5780 Query 167429 TCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCT 167488 | ||| || ||||| | ||||| || ||||| | ||||||||||| || | Sbjct 5781 TTGTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTT 5840 Query 167489 TCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACAC 167548 | || ||||| || || || |||||| ||||||| ||||||| || || || |||||| Sbjct 5841 TTGGTGTCGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACAT 5900 Query 167549 TGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAA 167608 |||| ||||||||||||||||| || || ||| | |||| | ||| | || | || | Sbjct 5901 TGAACCCATTTCATATGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTA 5960 Query 167609 TCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTA 167668 | ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || || Sbjct 5961 TTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCC 6020 Query 167669 AGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCT 167728 || || | | ||||| | ||||| |||||||||||||| || || ||||| || | Sbjct 6021 GTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 6080 Query 167729 GGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTAT 167788 |||| || ||||| || ||||||| ||| ||||| ||| | |||||||||||||||| Sbjct 6081 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 6140 Query 167789 TCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATC 167848 | || || || | || | |||| | |||| | | || ||||||| || | Sbjct 6141 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACC 6200 Query 167849 TTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAA 167908 | || || || || ||||||||||| || ||| | || ||||| ||||| || ||||| | Sbjct 6201 TACGCGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGA 6260 Query 167909 CTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCG 167968 | ||||| || ||||| || ||| | |||||||| |||| || ||| | || || | Sbjct 6261 CGTTCTACACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAG 6320 Query 167969 ATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTAT 168028 |||| |||||||| ||| || | ||||| ||||| ||||| || || || ||||| || | Sbjct 6321 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 6380 Query 168029 AA 168030 || Sbjct 6381 AA 6382 >seq9596 Length=34882 Score = 152 bits (168), Expect = 6e-32 Identities = 204/284 (72%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 167747 TTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGAC 167806 ||||||| ||| ||||| ||| | ||||||||||||||||| || || || | || Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 167807 TTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCG 167866 | |||| | |||| | | | ||||||| || || || || || || |||| Sbjct 5419 TATGGATGAGTGCTCTTGGAGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTCG 5478 Query 167867 TTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACA 167926 ||||||| || ||| | || ||||| ||||| || ||||| || ||||| || ||||| | Sbjct 5479 TTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAATA 5538 Query 167927 TCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGAGAACT 167986 | ||| | |||||||| |||| || ||| | || || ||||| |||||||| ||| Sbjct 5539 TTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACC 5598 Query 167987 TTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 || | ||||| ||||| ||||| || || || ||| | || ||| Sbjct 5599 TTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAA 5642 >seq5685 Length=160749 Score = 149 bits (164), Expect = 7e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 166522 TCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 166581 || || || || || ||||||||| || |||||| | || || || ||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 166582 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 166641 | || || ||| ||||| |||||| | || |||||||| |||||||| ||| | || Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 166642 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGT 166701 ||| |||| ||| |||| | || |||| || ||| || |||| || ||| || ||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 166702 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTG 166756 | ||||||||||| ||| ||||| || || || ||||| || ||| | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq5932 Length=82879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| |||| ||||||| || |||||||| Sbjct 58709 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACTGACTGGTCGTA 58768 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 58769 GGTTCGAATCCTACTTGGGGAG 58790 >seq2527 Length=327098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||||| Sbjct 20296 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 20237 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 20236 CCTACTTGGGGAG 20224 >seq87 Length=196929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||||| Sbjct 130564 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 130623 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 130624 CCTACTTGGGGAG 130636 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||| ||||||||||| Sbjct 130366 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCATAGGTTCAAAT 130425 Query 18188 CCTACCTGGGGAG 18200 ||||| | ||||| Sbjct 130426 CCTACTTAGGGAG 130438 >seq388 Length=54843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 167554 CCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCAT 167613 ||||||||||||||||| || || ||| | |||||| ||| | || | ||| | ||| Sbjct 28338 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGTTGCTCTTCTATGTGCTACTCAT 28279 Query 167614 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGG 167671 |||| || |||||||||||||| |||||||| ||| | ||||| || |||| || Sbjct 28278 GGTGCAACTGTAGAGAATACTTTAGTTGAAGATGATGATAATGCAAATACATTTAGGG 28221 >seq10558 Length=67895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||||||||||| || ||| |||||||||||| Sbjct 63376 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGACTGTTAACTGAAAGGTTGTAGGTTCAAAT 63317 Query 18188 CCTACCTGGGG 18198 ||||| ||||| Sbjct 63316 CCTACTTGGGG 63306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560966281566400