Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq5990 495 1e-135 seq5685 118 3e-22 seq6232 104 7e-18 >seq5990 Length=34798 Score = 495 bits (548), Expect = 1e-135 Identities = 689/963 (72%), Gaps = 2/963 (0%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 |||| |||||| | |||||||| || || | ||||| || | ||| ||| |||| || Sbjct 10040 AACCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 10098 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| || || ||| | || || || || || ||||| || || || Sbjct 10099 TTCTGTATTTATTATTGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGA 10158 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | || || || || || || || || ||| | |||| | Sbjct 10159 ACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTAC 10218 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | ||||| |||||||| |||||||||| | | |||||||||| Sbjct 10219 TTCTGCAGCTATAGGTTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATG 10278 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| |||||||| | | || | || | |||||| | |||| || | Sbjct 10279 GTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 10338 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| | |||||||||||||| | || ||||| ||| | || ||||| ||| Sbjct 10339 TTATATGGGTCATGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGT 10398 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || ||||| || || | ||| |||||||| ||| | | ||||| |||| || Sbjct 10399 TGCATATTCAGCTCCAGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCA 10458 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || |||||||| | |||||| | || || || || || ||||||| |||| | || Sbjct 10459 AGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 10518 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||||||||||||| || |||||||| || ||||||||| | ||||| || || || Sbjct 10519 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 10578 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| | || | ||| ||||||||| ||| || |||| || || | || | Sbjct 10579 ATTCGACGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAG 10638 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || ||| | ||||||| || |||||||||||||| || Sbjct 10639 GGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 10698 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| ||||| || |||||||| || |||||||| || | || |||||||||||||| || Sbjct 10699 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTT 10758 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 || ||||| ||| | | |||||||| || || || |||||||| |||||||| ||||| Sbjct 10759 CAACAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTT 10818 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | || |||||||||||||| ||||||||||| || |||||||| Sbjct 10819 CACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATC 10878 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | | || || || || || ||||||||| | ||| |||| ||||| || Sbjct 10879 TGTAGTTGATAGTCAAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAA 10938 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219 |||||| | || || |||||||| || || || || || ||||| || ||| | || || Sbjct 10939 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTC 10998 Query 42220 CGT 42222 || Sbjct 10999 TGT 11001 >seq5685 Length=160749 Score = 118 bits (130), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 41985 ATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTG 42044 |||| ||| | | |||||||| ||| || |||||| | |||||||||||||| | Sbjct 78493 ATTCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTT--CAC 78550 Query 42045 CGCTTGGCGTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCT 42102 ||||| || || || |||||||||||||| ||||||||||| || |||||||| | Sbjct 78551 CGCTTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGT 78610 Query 42103 GCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCT 42162 | | | | | || || || || |||| || ||| ||| |||| ||||| ||||| Sbjct 78611 AGTTGATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCT 78670 Query 42163 TGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATCCGT 42222 ||| || || |||| ||| || || || || || ||||| || ||| | || || || Sbjct 78671 TGGTACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTGT 78730 Query 42223 GGA 42225 || Sbjct 78731 CGA 78733 >seq6232 Length=104065 Score = 104 bits (114), Expect = 7e-18 Identities = 183/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | ||||||||||| | |||||||| || || | ||||| || | ||| ||| | Sbjct 82873 ACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGATCCC-TACCTTATTGAC 82815 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 || || || |||||||| || || ||| || || || || || || ||||| || Sbjct 82814 CGTAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCCTCCGGTGGATATTGATGGTAT 82755 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || ||||| || |||| || || | || || || || || || || || ||| | | Sbjct 82754 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAATAATATTATTTCTGGTGCCATTAT 82695 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || || | ||||| |||||||| |||||||||| | | |||| Sbjct 82694 TCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCTGGTTCCGTTGA 82635 Query 41494 TGAATGGCTGTACAACGGCGGTCC 41517 ||||||| | ||||| | ||||| Sbjct 82634 TGAATGGTTATACAATGATGGTCC 82611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146144677297824