Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq5990 540 3e-149 seq6232 167 7e-37 seq5685 134 4e-27 seq9475 95.1 3e-15 seq4685 95.1 3e-15 >seq5990 Length=34798 Score = 540 bits (598), Expect = 3e-149 Identities = 718/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| | | || ||||| ||| | || | | | |||| |||||| |||| |||||| Sbjct 10004 TGGGGTTACTTCTGTAAATGGATAACCAGCATTGAAAACCATCTTTACATTGGATGGTTT 10063 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | ||||||| Sbjct 10064 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCA 10121 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||| | ||||| || || |||||||| |||||||||||||| ||||| ||||| || | Sbjct 10122 TTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 10181 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || || || || || ||||||||| | | |||| | || || || | || | Sbjct 10182 ACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTTCACT 10241 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | || |||| |||||| | ||||||||||| |||||| Sbjct 10242 TTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGGTCCTTATA 10301 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | ||| |||| | || ||||||| Sbjct 10302 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAAC 10361 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || || || |||| Sbjct 10362 TTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTG 10421 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 || ||||| || ||| | | ||||| |||| ||||| ||||| || || |||| Sbjct 10422 ATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGACGGTATGC 10481 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 10482 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 10541 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | ||||| || || ||||| | || || | ||| | Sbjct 10542 TTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCTATTCAGTG 10601 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | | || || ||| | | | | ||||| || ||||| ||| Sbjct 10602 CTATGCATGGTTGCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 10661 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 || | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 10662 CTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 10721 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | || ||||||||||| | |||| || ||| ||| ||||| || Sbjct 10722 GTTATTTTGGCCGATTGATTTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACAT 10780 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| || || || || ||||||||| || | || |||| ||| Sbjct 10781 TTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 10840 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||||| |||||||| || || |||||||| | ||||||| ||| |||| Sbjct 10841 ATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCAT 10900 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||| |||||| ||||| | |||||||| |||||||| | || || ||||| Sbjct 10901 GTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCAT 10960 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGA 43265 || || ||||| ||||| ||||| || || Sbjct 10961 GAACGTAATGCTCATAATTTCCCTCTAGA 10989 >seq6232 Length=104065 Score = 167 bits (184), Expect = 7e-37 Identities = 230/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||| | | || ||| | ||||||||||| |||| |||||| Sbjct 82903 TGGGGTCGCTTCTGTAACTAGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 82844 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 || || ||||||| |||| || | | || | |||| |||||| | |||||||| Sbjct 82843 GGCGTTTTGATGAT-CCCTACCTTATTGACCGTAACTTCTGTATTTATTATTGCTTTCAT 82785 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| |||||||| || |||||||| |||||||||||||| ||||| ||||| || || Sbjct 82784 TGCTGCTCCTCCGGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 82725 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || || || || || ||||||||| | | |||| | || || || | || || Sbjct 82724 CGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTT 82665 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | || |||| |||||| | ||||||| || |||||| | Sbjct 82664 TTACCCAATATGGGAAGCTGGTTCCGTTGATGAATGGTTATACAATGATGGTCCTTATGA 82605 Query 42579 GCTCGTCGTGTTCCACTTC 42597 ||| | || | |||||| Sbjct 82604 GCTAATTGTTCTACACTTC 82586 >seq5685 Length=160749 Score = 134 bits (148), Expect = 4e-27 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 43044 TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCT 43103 ||| ||||| || ||||| ||| |||||||| | || || ||||||||||| || | Sbjct 78497 TCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCTTT 78556 Query 43104 TGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGA 43163 || ||| |||||||| || ||||| |||||||| || || |||||||| | ||||| Sbjct 78557 AGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 78616 Query 43164 TAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTT 43223 || ||| | ||| || ||| | || ||||||| | |||||||| |||||||| Sbjct 78617 TAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGTAC 78676 Query 43224 TGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 || || |||| || || ||||| ||||| ||||| || || Sbjct 78677 GGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGA 78718 >seq9475 Length=46076 Score = 95.1 bits (104), Expect = 3e-15 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 42309 GACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGC 42368 |||| | ||||||||||| |||| |||||||| || ||||||| |||| || | | Sbjct 2486 GACTGAAAACCGTCTTTACATTGGATGGTTTGGCGTTTTGATGAT-CCCTACCTTATTGA 2428 Query 42369 TGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCA 42427 | | |||| |||||| | |||||||||||||| | | |||| || |||||||| | Sbjct 2427 ACTCAACTTCTGTATTTATTATTGCTTTCATTGCTGCTCTTTCGGTGGATATTGATGGTA 2368 Query 42428 TTCGTGAACCTGTCTCTGG 42446 || |||||||||| ||||| Sbjct 2367 TTTGTGAACCTGTTTCTGG 2349 >seq4685 Length=19895 Score = 95.1 bits (104), Expect = 3e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 42741 TTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCA 42800 |||||| |||| ||||||||||| ||||| ||||| ||||||||| || | || ||||| Sbjct 6876 TTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTGATTGTATTCCA 6817 Query 42801 GGCTGAACATAACATTCTTATGCATCCTTTCCATATG 42837 || ||| || ||||| |||||||| || || || ||| Sbjct 6816 GGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143464356025488