Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq5990 457 3e-124 seq6232 140 1e-28 seq5685 123 7e-24 seq4685 89.7 2e-13 >seq5990 Length=34798 Score = 457 bits (506), Expect = 3e-124 Identities = 695/987 (70%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| || || || |||||||||||||| || ||||||||||| | || ||| Sbjct 10998 GAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGG 10939 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| || || | | || |||||| ||| |||| | || | | ||| ||||| Sbjct 10938 TTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACA 10879 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| || || |||||||||| ||| || ||||| |||| |||||| | || || Sbjct 10878 GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTG 10819 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || || || ||||||| || || |||||||| | |||||| || || Sbjct 10818 AACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGTTG 10759 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 ||||| ||||| || ||||| |||| ||||| || || || ||||| || |||||||| Sbjct 10758 AAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAA 10699 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| || || | || || | || || | | ||||| ||||| Sbjct 10698 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCC 10639 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | ||||| ||||| | || ||||||||| ||| || | || |||| Sbjct 10638 CTGATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGAAT 10579 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| ||||| ||| || ||||||||||| || || || || || || |||||| Sbjct 10578 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 10519 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | ||| ||||| ||||||||||| || || |||||||| || ||| ||| || ||| Sbjct 10518 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCT 10459 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || || | ||||| | ||||| || || || | | | ||| |||| ||||||| Sbjct 10458 TGACCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATATGCA 10399 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| ||||| || | ||| ||||| | | || |||||||||| || ||| Sbjct 10398 ACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATATAA 10339 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| | Sbjct 10338 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAAC 10279 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 || || || | | |||||||||| || |||||||| || | || || || ||| Sbjct 10278 CATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTGCAGAA 10219 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | || || || || ||||| |||||||| | || || || ||||| || Sbjct 10218 GTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGT 10159 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGT 26772 ||||| || ||||| ||||| || || || | || ||||| |||| ||||| ||| | Sbjct 10158 TCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATACA-GA 10100 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| || | | |||| || ||||| | || || |||||||| | || ||| |||| Sbjct 10099 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGATGGTT 10040 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 ||| | || || | ||| | ||| || Sbjct 10039 TTCAATGCTGGTTATCCATTTACAGAA 10013 >seq6232 Length=104065 Score = 140 bits (154), Expect = 1e-28 Identities = 218/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || || ||||||||| ||| Sbjct 82572 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCATCATTGTATAACCAT 82631 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | ||||||||||| || |||||||| || | || || || ||| | Sbjct 82632 TCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 82691 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || ||||| |||||||| | || || || ||||| || ||| Sbjct 82692 GGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 82751 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| ||||| || || || || || ||||| |||| ||||| ||| | ||| Sbjct 82752 CGAATACCATCAATATCCACCGGAGGAGCAGCAATGAAAGCAATAATAAATACA-GAAGT 82810 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 | | | |||| || ||||| | || || |||||||| | || |||||||| || Sbjct 82811 TACGGTCAATAAGGTAGGGATCATCAAAACGCCAAACCATCCAATGTAAAGACGGTTTTC 82870 Query 26836 AGTACTTGT 26844 ||| || || Sbjct 82871 AGTGCTGGT 82879 >seq5685 Length=160749 Score = 123 bits (136), Expect = 7e-24 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| || || || |||||||||||||| || |||||||||| || ||| Sbjct 78727 GAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAAGG 78668 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCA---TTAAC-ATCTAC 25989 ||||| || || | | |||| || ||||||||| | || || || ||| || Sbjct 78667 TTAGCACGATTAATAATATCAACC----TAGGTATTAATTACACAACCTTGACTATCAAC 78612 Query 25990 TACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGA 26049 ||| || ||||| || || |||||||||| ||| || ||||| ||| |||||| | || Sbjct 78611 TACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGC 78552 Query 26050 TGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 || | ||| || || || | ||||||| ||| |||||||| | |||||| Sbjct 78551 GGTGAACCAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATGTAAAGAACG 78498 >seq4685 Length=19895 Score = 89.7 bits (98), Expect = 2e-13 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 26305 ACCAGC--CATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATA 26362 |||||| ||| || ||||||||||| || || || || || | |||||||| | || Sbjct 6772 ACCAGCTACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACG 6831 Query 26363 AAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 ||||| ||||||||||| || ||||||||||| |||| | |||||| |||| || Sbjct 6832 AAGTTGAAAGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACC 6887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147641563163520