Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq5990 448 1e-121 seq5685 104 7e-18 seq4685 86.0 2e-12 >seq5990 Length=34798 Score = 448 bits (496), Expect = 1e-121 Identities = 699/992 (70%), Gaps = 8/992 (1%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||||||||||||||| || || ||||| ||||| || ||||| ||||||||||| | Sbjct 11000 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 10941 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | |||| || || |||||| ||| ||| || | ||| | | || |||| Sbjct 10940 GGTTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTA 10881 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| | ||| ||||||||||| ||||| | | | Sbjct 10880 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 10821 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || |||| | || ||||| |||| | ||| ||||| Sbjct 10820 TGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGT 10761 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || || | || ||||| ||||| || ||||||||||| |||| Sbjct 10760 TGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 10701 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || | || ||||| || | || || | ||| |||||| |||| ||||| | Sbjct 10700 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTT 10641 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 ||| || | ||||| || | || || ||||||||| || | | ||| | | Sbjct 10640 CCCTGATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGA 10581 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || || || || | ||| || ||||||||||| || |||||||| || || |||| Sbjct 10580 ATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 10521 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | |||| |||||||||||| || ||| ||||||| ||||||||| ||||| || | Sbjct 10520 ATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTC 10461 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGC-TGA-CAA-TGGAGCTGTGT 41124 | ||||| | ||||| | ||||| ||||| || ||| | | ||| |||||||| | Sbjct 10460 CTTGACCAATGGGATATATCAAGAAAACAGC---AGTTGCATCAGCAACTGGAGCTGAAT 10404 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| ||| ||||| || | ||||||||| | | | ||||||||||| ||| Sbjct 10403 ATGCAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCA 10344 Query 41185 CGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGT 41244 || ||||| || | ||| ||||| | ||||| || | ||| || ||||| |||| Sbjct 10343 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGT 10284 Query 41245 ATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 ||| ||| || || | | | |||||||| |||||||| || || | || || || Sbjct 10283 ATAACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTG 10224 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | || ||||| |||||||| || ||||| | || || || |||| Sbjct 10223 CAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAA 10164 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 | || ||||| || ||||| ||||| || || || | || || || || || || || | Sbjct 10163 CAGGTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATA 10104 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 || | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 10103 CA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 10045 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||| || |||| || | ||| ||||| || Sbjct 10044 TGGTTTTCAATGCTGGTTATCCATTTACAGAA 10013 >seq5685 Length=160749 Score = 104 bits (114), Expect = 7e-18 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||||||||||||||| || || ||||| ||||| || |||| |||||| |||| | Sbjct 78729 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAA 78670 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | |||| || |||| || | ||| ||| || ||| | | || |||| Sbjct 78669 GGTTAGCACGATTAATAATATCAACCTAGGTATTAATTACACAACCTTGACTATCAACTA 78610 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| | ||| ||||||||||| ||||| | | || Sbjct 78609 CGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGG 78550 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTA 40752 | | ||| || || | | || |||| ||| ||||| |||| Sbjct 78549 TGAACCAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATGTA 78505 >seq4685 Length=19895 Score = 86.0 bits (94), Expect = 2e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||| || ||||||||||| || |||||||| || | ||||| |||| || ||||||||| Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 || ||| ||||| | ||||||||||| ||| ||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAA 6876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143633875151304