Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq5990 562 3e-155 seq6232 132 5e-26 seq5685 102 9e-17 seq4685 100 3e-16 >seq5990 Length=34798 Score = 562 bits (622), Expect = 3e-155 Identities = 696/951 (73%), Gaps = 6/951 (1%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||| ||| | ||| |||||||| || ||||| ||||| || |||||||||||||| |||| Sbjct 11000 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 10941 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGA 67476 | || | |||| || | ||||| ||| ||| || | ||| ||||| | Sbjct 10940 GGTTAGCACGATTAATAATATTAGCCCAGGTATTAATTACATGACCTTGACTATCAACTA 10881 Query 67477 CGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAG 67536 | ||||||||||| |||||||| || | |||||| |||||||| | ||| | |||| Sbjct 10880 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 10821 Query 67537 TGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGT 67596 |||||||||| | || ||||| | || || |||||||| || | | | || |||| Sbjct 10820 TGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAATTGT 10761 Query 67597 TGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGT 67656 ||||| ||||| ||||| ||||| || || || || ||||||||||| || || || | Sbjct 10760 TGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 10701 Query 67657 AAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTT 67716 |||| ||||| ||||| ||||| ||||||| | ||| || || | || || |||| Sbjct 10700 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTT 10641 Query 67717 CTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGA 67776 | ||||| | | |||||| || | |||| ||||||||||| || || ||||| ||| Sbjct 10640 CCCTGATCAAACTAGAAGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGTCGA 10581 Query 67777 ATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGA 67836 ||||||| ||||| || | ||| || |||||||||||||||||||||||||| || |||| Sbjct 10580 ATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 10521 Query 67837 ACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAAC 67896 | || | |||| |||| |||||||||||||| || |||||||| ||||||| || | Sbjct 10520 ATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTC 10461 Query 67897 CTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATG 67956 ||||||| | ||||| | |||||| ||||| ||| ||| |||||||| || |||| Sbjct 10460 CTTGACCAATGGGATATATCAAGAAAACAGCAGTTGCATCAGCAACTGGAGCTGAATATG 10401 Query 67957 CTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC---AC 68013 | ||| |||||||| |||||||| |||||| || ||||||||||| | |||| | Sbjct 10400 CAACAGCAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCATGACCCATAT 10341 Query 68014 AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTAT 68073 | | ||| | || | | |||||| | || | || | |||| || ||||| | Sbjct 10340 AACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGT 10284 Query 68074 ACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGT 68133 | ||||| ||||| | | | |||||||| || || || ||||||| ||| || || Sbjct 10283 ATAACCATTCATCAACGGAAACAGCTTCCCATATTGGGTAAAAGTGAAAACCTATAGCTG 10224 Query 68134 TTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAA 68193 ||| |||||| || ||||||||||| || || || ||||| | || || || | || Sbjct 10223 CAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAAGTAGAGATCCAGAAA 10164 Query 68194 CAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGC 68253 ||||||| | |||||||| ||||| |||||||| | |||||||| ||||| || || Sbjct 10163 CAGGTTCACGAATACCATCAATATCCACTGGAGGAGTAGCAATGAAAGCAATAATAAATA 10104 Query 68254 AAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || | ||| | | ||| ||| |||||||| ||||| ||||| |||| Sbjct 10103 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 10053 >seq6232 Length=104065 Score = 132 bits (146), Expect = 5e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118 |||| ||| |||| || ||||| ||||| | | | |||||||| || || || |||| Sbjct 82609 AAGGACCATCATTGTATAACCATTCATCAACGGAACCAGCTTCCCATATTGGGTAAAAGT 82668 Query 68119 GAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA 68178 | | ||| || || ||| |||||| || ||||||||||| || || || ||||| | Sbjct 82669 GCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTCCGTAAA 82728 Query 68179 TGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGA 68238 || || || | ||||||||| | |||||||| ||||| || ||||| || ||||||| Sbjct 82729 GTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCCACCGGAGGAGCAGCAATGA 82788 Query 68239 ATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACC 68298 | ||||| || || || | | | | | ||| ||| |||||||| || || |||| Sbjct 82789 AAGCAATAATAAATACAGAAGTTACGGTCAATAAGGTAGGGATCATCAAAACGCCAAACC 82848 Query 68299 AACCAA 68304 | |||| Sbjct 82849 ATCCAA 82854 >seq5685 Length=160749 Score = 102 bits (112), Expect = 9e-17 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||| ||| | ||| |||||||| || ||||| ||||| || ||||||||||| | |||| Sbjct 78729 CAGAAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCACGCATAACTTCCGTACCAA 78670 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | |||| || || || | ||| ||| || || |||| |||| Sbjct 78669 GGTTAGCACGATTAATAATATCAACCTAGGTATTAATTAC---ACAACCTTGACTATCAA 78613 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | |||||||||||||| |||||||| || | |||||| |||||||| | ||| | | Sbjct 78612 CTACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAG 78553 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG 67579 | |||||||| || | || | ||| | || ||||||||| || Sbjct 78552 CGGTGAACCAAATACCTACTATAGGCCAAGCCATAAGGAAGAAATG 78507 >seq4685 Length=19895 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 67796 CATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAA 67855 ||| || |||||||||||||||||||||||||| | ||||| || | || | |||| || Sbjct 6780 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCACGAAGTTGAA 6839 Query 67856 AGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 |||||||||||| ||||||||||| | | ||| ||| ||||||| Sbjct 6840 AGTACCAGAAATTCCAAGAGGCATACCATTAGAAAAACTTTCTTGACC 6887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566662620852960