Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5335 129 1e-24 seq2326 127 4e-24 seq2332 123 4e-23 seq5462 95.1 2e-14 seq3733 93.3 8e-14 >seq5335 Length=19063 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || || |||| |||||| || | |||||| || || Sbjct 7963 ATTTGCATTCCACCACGAAGGCGGAGGACCAAATGCAAGGTGGACTCTTTCTGTATGTTG 8022 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || |||| | ||| || | || ||||| ||||| || | ||||| ||| Sbjct 8023 TAGTCAGCCAATGTTCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGA 8082 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||||||||| | ||| | ||| ||| || ||||| Sbjct 8083 TCTGGAGGAATACCTTCCTTGTCTTGTATTTTCGCTTTGACATTGTCAATTGTGTCGGAG 8142 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | ||| || || || ||||| || ||||| |||||||| ||||| Sbjct 8143 CTTTCAACTTCCAAAGTAATTGTCTTTCCTGTAAGAGTTTTAACAAATATCTGCAT 8198 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| |||||| ||||||||||| | || || || || Sbjct 7759 AGAACCAAATGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCCAAAGTCCTGCCCTCC 7818 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | |||||||| || || || | |||||||| || || || || ||||| ||||| Sbjct 7819 TCCAGCTGTTTTCCAGCGAATATAAGCCTCTGTTGGTCCGGTGGAATACCTTCCTTATCC 7878 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | ||| | || ||| ||||| || |||||| || ||||| ||||| Sbjct 7879 TGAATTTTTGCTTTGACGTTGTCAATTGTATCAGAGCTCTCAACCTCGAGAGTAATAGTC 7938 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || |||||||| ||||||||| Sbjct 7939 TTGCCAGTGAGGGTCTTTACAAAGATTTGCATT 7971 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| |||| || | || | ||||| || || || || Sbjct 8425 ATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCA 8484 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || || |||||||| ||||| || | ||||| || || || Sbjct 8485 GCAAGAGTACGACCGTCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGT 8544 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || |||||||| | ||| | ||| || ||||| || |||| Sbjct 8545 GGGATTCCTTCCTTGTCCTGTATTTTTGCTTTGACATTATCGATTGTATCAGAGCTCTCA 8604 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| ||||| || ||||| Sbjct 8605 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 8654 >seq2326 Length=95029 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| |||||| ||| |||||||| | || || || ||| Sbjct 85225 AGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCATCT 85166 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | |||||||| || || || | |||||||| || || || || ||||||||||| Sbjct 85165 TCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCC 85106 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | || | ||| ||||||||| || |||||| || ||||| ||||| Sbjct 85105 TGAATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGAGTAATAGTC 85046 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || |||||||| ||||||||| Sbjct 85045 TTGCCAGTAAGAGTCTTTACAAAGATTTGCATT 85013 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | || || || || || | ||||| || || ||| || || ||| Sbjct 84787 ATACCACCCCTGAGGCGGAGAACAAGGTGGAGTGTAGATTCCTTCTGAATGTTGTAATCG 84728 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || ||||| || ||||| | ||||| ||||| || Sbjct 84727 GCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGG 84668 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||| | || | ||| || ||||| ||| |||| Sbjct 84667 GGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTATCTATTGTATCAGAACTCTCA 84608 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || || || || || || ||||| Sbjct 84607 ACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACGAAAATCTGCAT 84558 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| || | || | || | ||||| || || || || Sbjct 84559 ATCCCACCTCTCAAACGAAGAACTAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 84500 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| || || ||||| || ||||| || | ||||| || || || Sbjct 84499 GCCAAAGTACGACCATCCTCCAACTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGT 84440 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || |||||||| | ||| | ||| || ||||| || ||| Sbjct 84439 GGGATTCCCTCCTTGTCCTGTATTTTTGCTTTGACATTATCGATTGTATCAGAGCTCTCG 84380 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| ||||| || ||||| Sbjct 84379 ACCTCAAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 84330 >seq2332 Length=86198 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| |||||| ||| |||||||| | || || || ||| Sbjct 74670 AGAACCAAATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCTGCCATCT 74611 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | |||||||| || || || | |||||||| || || || || ||||||||||| Sbjct 74610 TCAAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCC 74551 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | || | ||| ||||||||| || ||| || || ||||| ||||| Sbjct 74550 TGAATTTTTGCCTTAACATTGTCAATAGTATCAGAGCTCTCGACCTCAAGAGTAATAGTC 74491 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || |||||||| ||||||||| Sbjct 74490 TTGCCAGTAAGAGTCTTTACAAAGATTTGCATT 74458 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | || || || || || | ||||| || || ||| || || ||| Sbjct 74232 ATACCACCCCTGAGGCGGAGAACAAGGTGGAGTGTAGATTCCTTCTGAATGTTGTAATCG 74173 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || ||||| || ||||| | ||||| ||||| || Sbjct 74172 GCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGG 74113 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||| | || | ||| || ||||| ||| |||| Sbjct 74112 GGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTATCTATTGTATCAGAACTCTCA 74053 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || || || || || || ||||| Sbjct 74052 ACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACGAAAATCTGCAT 74003 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| || | || | || | ||||| || || || || Sbjct 74004 ATCCCACCTCTCAAACGAAGAACTAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 73945 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| || || ||||| || ||||| || | ||||| || || || Sbjct 73944 GCCAAAGTACGACCATCCTCCAACTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGT 73885 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || ||||| | ||| | ||| ||| ||||| || ||| Sbjct 73884 GGGATTCCCTCCTTGTCCTGAATTTTTGCTTTGACATTATCAATTGTATCAGAGCTCTCG 73825 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| ||||| || ||||| Sbjct 73824 ACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 73775 >seq5462 Length=105758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||||| || | || || ||||||||| |||| | || | | || ||| Sbjct 92141 ACCAGATGCAGAGTCGATTCCTTCTGAATATTATAATCGGCGAGGGTGCGACCGTCCTCT 92082 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || ||||||||||| || || | ||||| || || || || || ||||| || ||||| Sbjct 92081 AACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCTTGG 92022 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | || || || ||||| ||| || || || || || ||||| Sbjct 92021 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTTTTT 91962 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| ||||| || || || ||||| || Sbjct 91961 CCGGTTAGGGTTTTCACGAAGATCTGCATCTT 91930 >seq3733 Length=159728 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||||| || | || || ||||||||| |||| | || | || ||| Sbjct 111641 ACCAGATGCAGAGTCGATTCCTTCTGAATATTATAATCGGCGAGGGTGCGGCCGTCCTCT 111700 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || ||||||||||| || || | ||||| || || ||||| || ||||| || ||||| Sbjct 111701 AACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGG 111760 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | ||| || |||||||| ||| || || | || || || || Sbjct 111761 ATCTTGGCCTTGACATTATCGATGGTATCGGAGCTCTCTACCTCCAAGGTGATCGTCTTT 111820 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || ||||| Sbjct 111821 CCCGTTAGGGTTTTGACGAAGATCTGCAT 111849 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||| || | || || ||||||||| || | | || | | || ||| Sbjct 62769 ACCAAATGCAGAGTCGATTCCTTCTGAATATTATAATCAGCGAGGGTCCGACCGTCCTCT 62828 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || ||||||||||| || || | ||||| || || ||||| || ||||| || ||||| Sbjct 62829 AACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGG 62888 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | || | ||| || |||||||| ||| || || | || || || || Sbjct 62889 ATCTTCGCCTTGACATTATCGATGGTATCGGAGCTCTCTACCTCCAACGTGATCGTCTTC 62948 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || ||||| Sbjct 62949 CCCGTTAGGGTTTTGACGAAGATCTGCAT 62977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899202818473920