Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2332 113 7e-20 seq2326 109 8e-19 seq5335 102 1e-16 seq762 98.7 1e-15 seq12080 93.3 6e-14 >seq2332 Length=86198 Score = 113 bits (124), Expect = 7e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | ||||| || |||||||| | || ||||| || Sbjct 74458 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTCGAGAGCTC 74517 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| || || || ||||| || ||||||||||| || || ||||| || Sbjct 74518 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 74577 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || |||| | || || || ||||| |||||| ||| ||||| | || ||||| Sbjct 74578 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAA 74637 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 74638 CATTCAGAAAGAGTCTACTCTTCATTTGGT 74667 >seq2326 Length=95029 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | ||||| || |||||||| | || || || || Sbjct 85013 AATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 85072 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| || || || ||||| || ||||||||||| || || ||||| || Sbjct 85073 TGATACTATTGACAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCACCAGACCA 85132 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || |||| | || || || ||||| |||||| ||| ||||| | || ||||| Sbjct 85133 ACAGAGGCTGATATTCGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCTGACTATAA 85192 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || |||||||| || Sbjct 85193 CATTCAGAAAGAGTCTACTCTTCATTTGGT 85222 >seq5335 Length=19063 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| ||||||| | || ||||| || ||||| || ||||| ||| || Sbjct 8198 ATGCAGATATTTGTTAAAACTCTTACAGGAAAGACAATTACTTTGGAAGTTGAAAGCTCC 8139 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||||||||| || ||||| || |||||||| || Sbjct 8138 GACACAATTGACAATGTCAAAGCGAAAATACAAGACAAGGAAGGTATTCCTCCAGATCAG 8079 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||||| || ||| |||| || | || || || Sbjct 8078 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGAACATTGGCTGACTACAAC 8019 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| |||||| | || | ||||| || Sbjct 8018 ATACAGAAAGAGTCCACCTTGCATTTGGT 7990 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| | ||||| || || || || | ||||| || |||| Sbjct 8426 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATAACTCTTGAAGTTGAGAGTTCT 8367 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| ||||| || || ||||||||||| || ||||| || Sbjct 8366 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 8307 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || ||||| ||||| ||| | ||||||| | |||||||| Sbjct 8306 CAGAGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGAACTTTGGCCGATTATAAC 8247 Query 156003 AT 156004 || Sbjct 8246 AT 8245 >seq762 Length=331234 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||| || || || || || | || |||||| || Sbjct 300239 ATGCAGATCTTTGTTAAGACTCTGACGGGCAAGACCATCACCCTCGAGGTCGAAAGCTCA 300298 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| ||| || ||||| || || || || || ||||| || Sbjct 300299 GACACTATTGATAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGATCAG 300358 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||||||||| ||||||||| | ||||| | || |||| Sbjct 300359 CAGAGGTTGATCTTTGCCGGTAAGCAACTCGAAGATGGTCGCACTTTGGCCGACTATA-- 300416 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| | || ||||| || ||| Sbjct 300417 ACATCCAAAAGGAGTCCACACTTCACTTGGTG 300448 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| ||| | ||||| || || || || | || || ||| || Sbjct 316453 ATGCAGATCTTTGTTAAGACACTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 316512 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || ||||| || || || || || ||||| || Sbjct 316513 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAG 316572 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| ||||||||||||||| Sbjct 316573 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAAGAT 316608 >seq12080 Length=19512 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| ||||| ||| | |||||| |||| || || || ||||| || |||||| Sbjct 8544 CACGCGAAATCGCAGTGGAGACCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAAC 8485 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||||| || | ||||||||||||||||||| ||| || | || ||||| Sbjct 8484 CCGGGCATTAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAA 8425 Query 18278 ATACCCTCAACGCACGCGAACGCTAT 18303 || || || ||||| ||||| || || Sbjct 8424 ATGCCTTCGACGCAAGCGAAGGCGAT 8399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731504636849600