Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq39275 113 1e-19 seq3022 102 2e-16 seq13333 98.7 3e-15 seq11073 95.1 4e-14 seq5221 89.7 2e-12 seq5704 86.0 2e-11 >seq39275 Length=3285 Score = 113 bits (124), Expect = 1e-19 Identities = 279/421 (66%), Gaps = 12/421 (3%) Strand=Plus/Plus Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 ||||| |||||||| || | | || || |||||||||||||| ||||||||| Sbjct 1829 TTAAAACCATCCATTTCAGTAAGCAGCTGGTTGAGTGTTTGTTCCCTCTCATCATTT--- 1885 Query 288997 CCTCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATG 289053 |||| |||| | | | |||| | | | ||||||||||| || || ||||| Sbjct 1886 CCTC------CACCAATACCTGTTCCTCTCTGCCTCCCAACAGCATCTATCTCATCAATA 1939 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 |||| || || || ||||| | || | ||||| || || || | || || Sbjct 1940 AAAACCAAGCATGGGGAATTAGCCTTTGCTTTGTTGAATAAGTCCCTCACTCTTGAAGCC 1999 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | ||||||| |||| || | || || || | |||| || ||| | || | Sbjct 2000 CCTACACCAACAAACATCTCAATGAACTCTGACCCAGATAGAGAAAAGAAAGGAACCCCT 2059 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| || || | |||| | |||| | |||||| || || |||||||| || | Sbjct 2060 GCTTCTCCAGCAATTGCCTTGGCCAACAATGTCTTTCCAGTCCCAGGTGGACCAAGAAGA 2119 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 |||||||| || || | ||| || ||| | | || | || || ||| | || || || Sbjct 2120 AGAACTCCTTTAGGAATTTTAGCTCCAACTGCAGTAAACTTTTCTGGGGTTTTCAAGAAC 2179 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTA 289353 || ||||| || | || || | ||||| |||||| || || |||||| |||| ||| Sbjct 2180 TCAACAATCTCTTGAAAATCTTGCTTTGCTTCATCAACACCAGCAACATCATCAAACGTA 2239 Query 289354 A 289354 | Sbjct 2240 A 2240 >seq3022 Length=39802 Score = 102 bits (112), Expect = 2e-16 Identities = 254/381 (67%), Gaps = 5/381 (1%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 ||||| || || ||| | |||||||| |||||| ||| | ||| | | |||| Sbjct 38393 TGATTTAGAGTACTTTCACGCTCATCATTAGAACCTGA-GAAGCCCCC--ACGCCCCCTT 38337 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||| |||||||| || ||||| |||| | || |||| | || || || Sbjct 38336 GCTCGACCAATTGCATCAATCTCATCAATAAAAACTATACTGGGAGCACACTGCCTTGCT 38277 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| || | ||| || | ||| | ||||| ||| ||| |||| || | || || Sbjct 38276 TCTTGAAACAAGTTTCTCACCCTGGACGGTCCAACACCGACAAACATCTCCATGAAATCT 38217 Query 289144 GAAGCGGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | || | | || ||| | ||| | ||| ||||| ||| | || ||||| Sbjct 38216 GAACCAGAAA-TGGAGAGAAAAGGCACACCAGATTCCCCTGCAGTCGCCTTTGCTAGAAG 38158 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||||| ||||| || || || || | || ||| | || ||||| | |||||| || Sbjct 38157 AGTCTTTCCTGTACCTGGGGGACCTACCAAGAGAGCACCTTTTGGAATTTTTGCTCCCAA 38098 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | || |||||||| ||| |||||| || | |||| |||| | || | ||||| Sbjct 38097 ATCCTCATATTTCTTTGGGTTCTTTAGGAAGTGCACAAATTCCATGATCTCTTGCTTTGC 38038 Query 289323 CTCATCACATCCTGCTACATC 289343 ||||||||| || || ||||| Sbjct 38037 CTCATCACAGCCAGCAACATC 38017 >seq13333 Length=25420 Score = 98.7 bits (108), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| || ||||| | |||||| || | || Sbjct 25002 TACCTTTCCTCTTGCCCCCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTA 25061 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||| ||||| || || ||||| ||||| ||||||| || | | | Sbjct 25062 GCATTGGAACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCAC 25121 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||| ||| | ||||| || || | |||| ||| ||| || || | Sbjct 25122 GAATATTGTGAGCTGAGACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTT 25181 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| ||| | | || ||||||||| |||||||| ||| Sbjct 25182 TTAAAGTCTCATATATGCCTTCAATACTATCATCTTTCAT 25221 >seq11073 Length=25683 Score = 95.1 bits (104), Expect = 4e-14 Identities = 104/136 (76%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 301831 GGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGA 301890 ||||||||| | || || || ||| || |||||||||| | ||||| ||||||||| Sbjct 4973 GGAACACCAAGAGTGACATTCT--TTGCACT-AACACCAGCATAATGGAAGGTATTCAGA 5029 Query 301891 GTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCCT 301950 || | || |||| |||||||||||| |||||| |||| ||||| |||||| || Sbjct 5030 GTCATCTGTGTAGCAGGCTCACCAATAGATTGTGCAGCAACACAACCAATCATTTCCCCA 5089 Query 301951 GGTGCTACAATAGACT 301966 |||||||||| |||| Sbjct 5090 GGTGCTACAAGTGACT 5105 >seq5221 Length=138276 Score = 89.7 bits (98), Expect = 2e-12 Identities = 211/316 (67%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || ||||| || || | || || | | |||||| || | Sbjct 66036 ACCAATTGCATCTATCTCATCAATAAATATTATACTAGGTGCACATTGTCTTGCCTCTTG 66095 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| ||| || | |||| |||| ||||||| ||||||| | ||| || || | Sbjct 66096 AAATAAGCTTCTAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCTGACCC 66155 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | || | ||| | ||| |||||| |||| | || ||||| |||| Sbjct 66156 AGATA-TAGATAAAAAAGGGACAGCAGATTCACCTGCTGTTGCCTTTGCAAGAAGCGTCT 66214 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || || || || ||| | | || | || ||||| | ||| || || || Sbjct 66215 TCCCAGTGCCTGGAGGACCCACAAGAAGTGCACCTTTTGGAATTTTCGCTCCTAATTCCT 66274 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||| |||| || |||| | || | |||| ||| | ||| | |||||||||| Sbjct 66275 CATACTTCTTTGGATTCTTGAGGAAATGAACAAACTCCATGATTTCCTGCTTTGCCTCAT 66334 Query 289328 CACATCCTGCTACATC 289343 |||| || |||||||| Sbjct 66335 CACAGCCAGCTACATC 66350 >seq5704 Length=72442 Score = 86.0 bits (94), Expect = 2e-11 Identities = 210/316 (66%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || ||||| || || | || || | | |||||| || | Sbjct 15367 ACCAATTGCATCTATCTCATCAATAAATATTATACTAGGTGCACATTGTCTTGCCTCTTG 15426 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| ||| || | |||| |||| ||||||| ||||||| | ||| || || | Sbjct 15427 AAATAAGCTTCTAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCTGACCC 15486 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | || | ||| | ||| ||||| |||| | || ||||| |||| Sbjct 15487 AGATA-TAGATAAAAAAGGGACAGCAGATTCACCTGCAGTTGCCTTTGCAAGAAGCGTCT 15545 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || || || || ||| | | || | || ||||| | ||| || || || Sbjct 15546 TCCCAGTGCCTGGAGGGCCCACAAGAAGTGCACCTTTTGGAATTTTCGCTCCTAATTCCT 15605 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||| |||| || |||| | || | |||| ||| | ||| | |||||||||| Sbjct 15606 CATACTTCTTTGGATTCTTGAGGAAATGAACAAACTCCATGATTTCCTGCTTTGCCTCAT 15665 Query 289328 CACATCCTGCTACATC 289343 |||| || |||||||| Sbjct 15666 CACAGCCAGCTACATC 15681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471060351684572