Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq5990 563 9e-156 seq40156 506 2e-138 seq9596 161 1e-34 seq5685 149 7e-31 seq4685 100 3e-16 seq8349 86.0 7e-12 seq13284 82.4 8e-11 >seq5990 Length=34798 Score = 563 bits (624), Expect = 9e-156 Identities = 697/948 (74%), Gaps = 4/948 (0%) Strand=Plus/Plus Query 157622 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 157680 || ||||| || || ||||||| || || | ||| | ||||| ||||| || || | Sbjct 10055 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 10113 Query 157681 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 157740 || ||| | ||| |||| || ||||| || || || || |||||||| || |||| || Sbjct 10114 TGCTTTCATTGCTACTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 10173 Query 157741 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGG 157800 || | || || || || || || |||||||| || | || |||| || || || Sbjct 10174 TCTACTTTACGGAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 10233 Query 157801 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 157860 | ||||||| || || || |||||||| | || ||||||| ||| | || || || || Sbjct 10234 TTTTCACTTTTACCCAATATGGGAAGCTGTTTCCGTTGATGAATGGTTATACAATGGCGG 10293 Query 157861 TCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGA 157920 ||||| | || | || | |||||| | ||||| | | || ||||| | ||| Sbjct 10294 TCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGA 10353 Query 157921 GTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCC 157980 |||||||||| | |||| ||||||||||||| ||||| ||| |||||||| ||||| Sbjct 10354 GTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 10413 Query 157981 AGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGA 158040 ||| |||| ||| ||||||| ||| | | ||||| | |||||||| || || || Sbjct 10414 AGTTGCTGATGCAACTGCTGTTTTCTTGATATATCCCATTGGTCAAGGAAGCTTTTCTGA 10473 Query 158041 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158100 | ||||||||| || || ||||||||||| |||| |||| |||||||||| || || || Sbjct 10474 CGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 10533 Query 158101 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158160 |||||||||||||||||| || || ||| | ||||| ||||| ||||||| || || || Sbjct 10534 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGACGGTTCCCT 10593 Query 158161 TTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAA 158219 ||| ||||||||| || | | || |||| || | | || | ||||| || |||| Sbjct 10594 ATTCAGTGCTATGCATGGTTGCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAA 10652 Query 158220 CAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCG 158279 || || ||| | ||||||| ||||||||||||||||| || ||||| ||||| | Sbjct 10653 ATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 10712 Query 158280 CAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTT 158339 | || ||||| || || || || ||||| |||||||| ||| |||||||| || |||| Sbjct 10713 CTGCTCATGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTT 10772 Query 158340 CCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCG 158399 | || || |||||||| || || |||||||| || || ||||||||||| || | || Sbjct 10773 CTTTACATTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTA 10832 Query 158400 TCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTC 158459 || ||| ||||| |||||| | || |||||||| |||||||| || | ||||| ||| Sbjct 10833 TCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 10892 Query 158460 AGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAG 158519 | |||| ||| | || |||||||| || | | || || ||| ||||||||||||| Sbjct 10893 AAGGTCATGTAATTAATACCTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAG 10952 Query 158520 TTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 158567 |||||||||| ||||| || || || ||||| || ||| | ||| ||| Sbjct 10953 TTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 11000 >seq40156 Length=57058 Score = 506 bits (560), Expect = 2e-138 Identities = 720/1008 (71%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || || || |||||||| || ||||| || ||| | || || Sbjct 5378 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 5437 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || |||||| |||| || ||| | ||||| || ||| Sbjct 5438 CCTTGTGCTTATTTCGCGTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 5497 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGT 159484 || || || || | || ||||||||| | || || ||| ||||| | || || || || Sbjct 5498 TATACACATGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCGGCAGT 5556 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| | | | | || ||| | | |||| |||||||| || | || Sbjct 5557 TTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAGCACA 5616 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || |||| || ||||| ||| | || || | |||| |||||| || |||||||| Sbjct 5617 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 5676 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTA 159663 || |||| ||||| ||||||||| | ||||| |||||||| || || ||| | | Sbjct 5677 CGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 5735 Query 159664 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723 | || ||||| ||||| || || ||||||| ||| |||||||||||||| || |||| Sbjct 5736 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCC 5795 Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 | || || || | |||||||| ||||||| || || || ||||| || ||||| | Sbjct 5796 TGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTCGCAGCTA 5855 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | ||| ||||| | | || | ||||| ||||| || ||||| || || || || |||| Sbjct 5856 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 5915 Query 159844 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTG 159903 ||||||| ||||| ||| || | || | || || || | || || ||||| | ||| | Sbjct 5916 TGATGGGGGTTGCGGGTGTATTGGGCGCTGCCCTTCTATGCGCTATTCATGGTGCTACCG 5975 Query 159904 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAA 159963 |||| || || | | ||||||||| || |||||||| || || ||| | ||| Sbjct 5976 TAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAA 6035 Query 159964 CTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160023 |||||| ||| || ||||| || |||||||| || |||||||| ||||| || ||||| | Sbjct 6036 CTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTG 6095 Query 160024 GTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGG 160083 | |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | | Sbjct 6096 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 6155 Query 160084 GTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATT 160143 || | |||| || |||| | | ||| | ||||| || || || || || || | Sbjct 6156 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCTCTGAACCTACGCGCCTATGACT 6215 Query 160144 TCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 160203 |||| ||| || ||| | ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 6216 TCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAA 6275 Query 160204 ACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAA 160263 | || || || || ||||| | ||||| ||| |||| || ||||| || ||||||| Sbjct 6276 ATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 6335 Query 160264 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || |||| ||||| || || || | || | || ||||| ||||||| Sbjct 6336 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 6383 >seq9596 Length=34882 Score = 161 bits (178), Expect = 1e-34 Identities = 209/286 (73%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 160027 TTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTC 160086 |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | ||| Sbjct 5359 TTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 5418 Query 160087 TTTGGACATCCTCTATTGGCATTATTGGCCTTG-CTCTTAATCTTCGTGCTTACGATTTC 160145 | |||| || |||| | || | | |||| |||| || || || || || || ||| Sbjct 5419 TATGGATGAGTGCTCTTGG-AGTAGTCGACTTGGCTCTGAACCTACGCGCCTATGACTTC 5477 Query 160146 GTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAAC 160205 || ||| || ||| | ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 5478 GTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACGTTCTACACCAAAAAT 5537 Query 160206 ATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAAC 160265 || || || || ||||| | ||||| ||| |||| || ||||| || ||||||||| Sbjct 5538 ATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 5597 Query 160266 TTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| ||||| || || || | || | || ||| | ||||||| Sbjct 5598 CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACACTCTTTAAT 5643 >seq5685 Length=160749 Score = 149 bits (164), Expect = 7e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 158333 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 158392 || ||||| || || ||||||||| || |||||| | || || || ||||||||||| Sbjct 78495 TCTCGTTCTTTACATTTCTTCCTTATGGCTTGGCCTATAGTAGGTATTTGGTTCACCGCT 78554 Query 158393 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 158452 | || || ||| ||||| |||||| | || |||||||| |||||||| ||| | || Sbjct 78555 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 78614 Query 158453 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGT 158512 ||| |||| ||| |||| | || |||| || ||| | | || || ||| |||||| Sbjct 78615 GATAGTCAAGGTTGTGTAATTAATACCTAGGTTGATATTATTAATCGTGCTAACCTTGGT 78674 Query 158513 ATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 158567 | ||||||||||| ||| ||||| || || || ||||| || ||| | ||| ||| Sbjct 78675 ACGGAAGTTATGCGTGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTTCTG 78729 >seq4685 Length=19895 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 158021 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATG 158080 ||||||| ||| || ||| |||||||||||| || ||||||||||| |||| | || Sbjct 6887 GGTCAAGAAAGTTTTTCTAATGGTATGCCTCTTGGAATTTCTGGTACTTTCAACTTCGTG 6828 Query 158081 CTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATG 158128 |||||||||| | || |||||||||||||||||||| || || ||| Sbjct 6827 ATTGTATTCCAGGTTGAGCACAACATCCTTATGCACCCATTTCACATG 6780 >seq8349 Length=22456 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 158792 TACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTT 158851 ||||| || | |||||| ||||||||||||||||||| ||| || || | || Sbjct 13503 TACTCATGCAGGGCTGGTTCTTGCTCTTCATGTGCAGGGAAAGTTCAGGGAGGGAAAATT 13444 Query 158852 GATCAGAGTGATCAGTCG-TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTAC 158910 |||||| |||| || | ||| | || ||||| ||||||| || ||||| ||||| || Sbjct 13443 GATCAGTCTGAT-GGTAGCTTCCTTGATGATGAGCAGATTGAAGAAGGATGGGTTCTCAC 13385 Query 158911 GTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGAGAACCTCTA 158970 ||||| || |||||| |||||| ||| ||| || | | |||||| | ||| | Sbjct 13384 TTGTGTTGCTTATCCACAGTCTGATGTTGTCATTGAGACCCACAAGGAGGAGGAACTC-A 13326 Query 158971 CTG 158973 ||| Sbjct 13325 CTG 13323 >seq13284 Length=8732 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 159582 TGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTT 159641 |||| |||||| || ||||| | || ||| ||||| ||||||||| | ||||| ||| Sbjct 2466 TGGACTTTTGTTGCTCTCCATGACGCTTTCAAACTAATAGGTTTCATGTTACGTCAATTT 2407 Query 159642 GAACTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159700 ||||| || | ||| | | | || ||||| ||||| || || |||| || ||| || Sbjct 2406 GAACTTGCTCAATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGCTCCAAT 2348 Query 159701 TGCTGTTTTTGT 159712 |||||||||||| Sbjct 2347 TGCTGTTTTTGT 2336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548099143469920